Xylaria flabelliformis

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Pezizomycotina; leotiomyceta; sordariomyceta; Sordariomycetes; Xylariomycetidae; Xylariales; Xylariaceae; Xylaria

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11403 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A553HZZ0|A0A553HZZ0_9PEZI M20_dimer domain-containing protein OS=Xylaria flabelliformis OX=2512241 GN=FHL15_005492 PE=3 SV=1
MM1 pKa = 7.24PLKK4 pKa = 10.81YY5 pKa = 11.15NMMDD9 pKa = 3.82LCRR12 pKa = 11.84SDD14 pKa = 3.28NLRR17 pKa = 11.84YY18 pKa = 9.87VYY20 pKa = 10.31YY21 pKa = 10.72GQIWWDD27 pKa = 3.51NDD29 pKa = 3.23SDD31 pKa = 4.52PDD33 pKa = 4.06NLYY36 pKa = 11.11DD37 pKa = 6.55LDD39 pKa = 5.77DD40 pKa = 6.03LDD42 pKa = 6.35DD43 pKa = 5.74PDD45 pKa = 6.08DD46 pKa = 4.73DD47 pKa = 5.89GYY49 pKa = 11.04INSSDD54 pKa = 4.42KK55 pKa = 11.2EE56 pKa = 4.22DD57 pKa = 3.68ANKK60 pKa = 10.54DD61 pKa = 3.34AEE63 pKa = 4.48KK64 pKa = 10.96DD65 pKa = 3.5NKK67 pKa = 10.3FYY69 pKa = 11.44

Molecular weight: 8.29 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A553HYA3|A0A553HYA3_9PEZI Uncharacterized protein OS=Xylaria flabelliformis OX=2512241 GN=FHL15_006067 PE=4 SV=1
MM1 pKa = 7.31TSSTPPLLQRR11 pKa = 11.84PRR13 pKa = 11.84AHH15 pKa = 7.29HH16 pKa = 6.56ARR18 pKa = 11.84LDD20 pKa = 3.7KK21 pKa = 10.61TIPPALRR28 pKa = 11.84PVIRR32 pKa = 11.84AYY34 pKa = 10.9VLGYY38 pKa = 10.6ASAVAPRR45 pKa = 11.84VLTLVLQYY53 pKa = 10.12GARR56 pKa = 11.84WRR58 pKa = 11.84RR59 pKa = 11.84RR60 pKa = 11.84KK61 pKa = 10.02SRR63 pKa = 11.84GPVIVNGTQPQDD75 pKa = 3.26SFVASLRR82 pKa = 11.84RR83 pKa = 11.84ILSGGLDD90 pKa = 3.52PQRR93 pKa = 11.84FPTFCATLIGGTTLLDD109 pKa = 3.44VLVRR113 pKa = 11.84RR114 pKa = 11.84LMKK117 pKa = 10.09RR118 pKa = 11.84WKK120 pKa = 8.62PQLSGIVRR128 pKa = 11.84RR129 pKa = 11.84RR130 pKa = 11.84LSIWISSFIAGWLSLRR146 pKa = 11.84LLQSKK151 pKa = 8.0KK152 pKa = 8.58TNAFAEE158 pKa = 4.78TKK160 pKa = 10.33AVNDD164 pKa = 4.51DD165 pKa = 3.39KK166 pKa = 11.61QKK168 pKa = 8.63TIRR171 pKa = 11.84YY172 pKa = 8.75AGRR175 pKa = 11.84TLDD178 pKa = 3.65LTLFAATRR186 pKa = 11.84AVDD189 pKa = 3.8VVVGEE194 pKa = 4.52LWSQRR199 pKa = 11.84RR200 pKa = 11.84QRR202 pKa = 11.84RR203 pKa = 11.84VAADD207 pKa = 2.97QWSWFDD213 pKa = 3.65SFISKK218 pKa = 9.03MADD221 pKa = 3.01PSIFATSCALIMWAWFYY238 pKa = 10.07TPCALPKK245 pKa = 10.33SYY247 pKa = 11.31NKK249 pKa = 9.45WISSAAAVDD258 pKa = 3.61SRR260 pKa = 11.84LIEE263 pKa = 4.0ALRR266 pKa = 11.84RR267 pKa = 11.84CHH269 pKa = 7.1KK270 pKa = 10.93GEE272 pKa = 3.76LRR274 pKa = 11.84YY275 pKa = 10.49GEE277 pKa = 4.22EE278 pKa = 3.97TGQAPLLQSMCSDD291 pKa = 3.73YY292 pKa = 11.04KK293 pKa = 10.81WPLEE297 pKa = 4.12WGDD300 pKa = 3.63PATTVPFPCEE310 pKa = 3.72IVHH313 pKa = 6.09MGCGPSCEE321 pKa = 3.93YY322 pKa = 10.24HH323 pKa = 5.61ALYY326 pKa = 10.66RR327 pKa = 11.84FFRR330 pKa = 11.84SFKK333 pKa = 10.01WSMATYY339 pKa = 10.7LPLNLLARR347 pKa = 11.84KK348 pKa = 9.47KK349 pKa = 10.36DD350 pKa = 3.47LQGFRR355 pKa = 11.84KK356 pKa = 9.98ALTSAARR363 pKa = 11.84SSSFLATFITLFYY376 pKa = 10.98YY377 pKa = 8.72GVCLARR383 pKa = 11.84TRR385 pKa = 11.84LGPRR389 pKa = 11.84LLGKK393 pKa = 8.49HH394 pKa = 4.43TASRR398 pKa = 11.84QKK400 pKa = 10.09IDD402 pKa = 3.35AGVCVGCGCFMCGWSIFFEE421 pKa = 4.25AASRR425 pKa = 11.84RR426 pKa = 11.84KK427 pKa = 10.55DD428 pKa = 3.1MALFVAPRR436 pKa = 11.84ALATLLPRR444 pKa = 11.84RR445 pKa = 11.84YY446 pKa = 9.14PLNKK450 pKa = 8.59QWRR453 pKa = 11.84EE454 pKa = 3.67TFVFAFSTAIVFTCVRR470 pKa = 11.84EE471 pKa = 3.69NRR473 pKa = 11.84ARR475 pKa = 11.84VRR477 pKa = 11.84GVLGNILGSVLEE489 pKa = 4.41TT490 pKa = 3.81

Molecular weight: 55.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11403

0

11403

5968531

57

6921

523.4

57.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.491 ± 0.02

1.207 ± 0.007

5.83 ± 0.015

6.072 ± 0.02

3.668 ± 0.013

6.744 ± 0.02

2.416 ± 0.009

5.097 ± 0.015

4.774 ± 0.015

8.893 ± 0.024

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.069 ± 0.007

3.848 ± 0.012

5.981 ± 0.023

3.971 ± 0.014

6.146 ± 0.02

8.292 ± 0.025

6.137 ± 0.017

6.069 ± 0.016

1.472 ± 0.008

2.821 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski