Shahe narna-like virus 5

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 8.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KI92|A0A1L3KI92_9VIRU RNA-dependent RNA polymerase OS=Shahe narna-like virus 5 OX=1923433 PE=4 SV=1
MM1 pKa = 7.8KK2 pKa = 9.57MFKK5 pKa = 10.59YY6 pKa = 10.01MRR8 pKa = 11.84GDD10 pKa = 3.56ATWDD14 pKa = 3.1QEE16 pKa = 4.13KK17 pKa = 9.88QVRR20 pKa = 11.84RR21 pKa = 11.84ICKK24 pKa = 6.41WTEE27 pKa = 3.32RR28 pKa = 11.84GMKK31 pKa = 9.99LYY33 pKa = 11.02SFDD36 pKa = 3.35LTAATDD42 pKa = 3.74RR43 pKa = 11.84WPAWHH48 pKa = 6.37QKK50 pKa = 10.33LVVDD54 pKa = 4.28RR55 pKa = 11.84VFNKK59 pKa = 10.8GIGEE63 pKa = 3.87MWFRR67 pKa = 11.84LMTTTTPYY75 pKa = 9.35ATEE78 pKa = 4.05LKK80 pKa = 10.28RR81 pKa = 11.84YY82 pKa = 8.36IRR84 pKa = 11.84YY85 pKa = 9.86AIGQPMGAYY94 pKa = 10.19SSWAVLNMTHH104 pKa = 6.87HH105 pKa = 5.5YY106 pKa = 10.15VIRR109 pKa = 11.84LCAKK113 pKa = 10.16RR114 pKa = 11.84IGVKK118 pKa = 10.16ALYY121 pKa = 10.13SVLGDD126 pKa = 3.51DD127 pKa = 3.85VVIVGKK133 pKa = 10.11EE134 pKa = 3.5LADD137 pKa = 3.85EE138 pKa = 4.1YY139 pKa = 10.96RR140 pKa = 11.84SYY142 pKa = 9.78ITRR145 pKa = 11.84LGVKK149 pKa = 10.26LNLNKK154 pKa = 10.56SILNTDD160 pKa = 4.88FGPCSAEE167 pKa = 3.9FARR170 pKa = 11.84HH171 pKa = 4.76IVRR174 pKa = 11.84DD175 pKa = 3.47GHH177 pKa = 6.84IVGTFSPSLVRR188 pKa = 11.84NIYY191 pKa = 10.53SYY193 pKa = 10.33TDD195 pKa = 3.19VYY197 pKa = 11.69ASIDD201 pKa = 3.63LLRR204 pKa = 11.84EE205 pKa = 4.12VQSKK209 pKa = 10.08LGQVIHH215 pKa = 6.84VYY217 pKa = 10.81EE218 pKa = 4.39NTTLLPIPIVRR229 pKa = 11.84LLKK232 pKa = 9.98TFSFKK237 pKa = 10.93DD238 pKa = 3.33DD239 pKa = 3.61LLAIVTVPLTALKK252 pKa = 10.38LPRR255 pKa = 11.84VYY257 pKa = 10.47HH258 pKa = 5.59PEE260 pKa = 3.92KK261 pKa = 10.9FEE263 pKa = 4.25GDD265 pKa = 3.51PMVGYY270 pKa = 10.73DD271 pKa = 3.52KK272 pKa = 10.83FANPWYY278 pKa = 9.47EE279 pKa = 3.73CDD281 pKa = 3.42INSVNAEE288 pKa = 4.28FGNKK292 pKa = 7.03WMRR295 pKa = 11.84EE296 pKa = 3.4ASLRR300 pKa = 11.84MNKK303 pKa = 10.02LEE305 pKa = 4.32SLLDD309 pKa = 3.57KK310 pKa = 11.24LGDD313 pKa = 4.01GGSTVYY319 pKa = 10.32RR320 pKa = 11.84GRR322 pKa = 11.84LLEE325 pKa = 4.32ISSHH329 pKa = 5.11PLRR332 pKa = 11.84YY333 pKa = 9.47SLKK336 pKa = 8.63PLKK339 pKa = 10.23EE340 pKa = 3.8EE341 pKa = 5.21LMNQFWRR348 pKa = 11.84VMRR351 pKa = 11.84GEE353 pKa = 4.1EE354 pKa = 4.05VPIFSSQLQTDD365 pKa = 3.22IDD367 pKa = 4.22LLIFTLTEE375 pKa = 4.08GKK377 pKa = 9.91SFRR380 pKa = 11.84TWRR383 pKa = 11.84NSKK386 pKa = 7.86TSKK389 pKa = 10.14RR390 pKa = 11.84KK391 pKa = 8.1HH392 pKa = 5.21ACMLIKK398 pKa = 10.35KK399 pKa = 8.04VLKK402 pKa = 9.81EE403 pKa = 3.91SHH405 pKa = 6.03RR406 pKa = 11.84VAAAMKK412 pKa = 8.36EE413 pKa = 4.09LPTTSMSWEE422 pKa = 4.37DD423 pKa = 3.46YY424 pKa = 10.98AKK426 pKa = 10.51QFEE429 pKa = 4.31

Molecular weight: 49.78 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KI92|A0A1L3KI92_9VIRU RNA-dependent RNA polymerase OS=Shahe narna-like virus 5 OX=1923433 PE=4 SV=1
MM1 pKa = 7.8KK2 pKa = 9.57MFKK5 pKa = 10.59YY6 pKa = 10.01MRR8 pKa = 11.84GDD10 pKa = 3.56ATWDD14 pKa = 3.1QEE16 pKa = 4.13KK17 pKa = 9.88QVRR20 pKa = 11.84RR21 pKa = 11.84ICKK24 pKa = 6.41WTEE27 pKa = 3.32RR28 pKa = 11.84GMKK31 pKa = 9.99LYY33 pKa = 11.02SFDD36 pKa = 3.35LTAATDD42 pKa = 3.74RR43 pKa = 11.84WPAWHH48 pKa = 6.37QKK50 pKa = 10.33LVVDD54 pKa = 4.28RR55 pKa = 11.84VFNKK59 pKa = 10.8GIGEE63 pKa = 3.87MWFRR67 pKa = 11.84LMTTTTPYY75 pKa = 9.35ATEE78 pKa = 4.05LKK80 pKa = 10.28RR81 pKa = 11.84YY82 pKa = 8.36IRR84 pKa = 11.84YY85 pKa = 9.86AIGQPMGAYY94 pKa = 10.19SSWAVLNMTHH104 pKa = 6.87HH105 pKa = 5.5YY106 pKa = 10.15VIRR109 pKa = 11.84LCAKK113 pKa = 10.16RR114 pKa = 11.84IGVKK118 pKa = 10.16ALYY121 pKa = 10.13SVLGDD126 pKa = 3.51DD127 pKa = 3.85VVIVGKK133 pKa = 10.11EE134 pKa = 3.5LADD137 pKa = 3.85EE138 pKa = 4.1YY139 pKa = 10.96RR140 pKa = 11.84SYY142 pKa = 9.78ITRR145 pKa = 11.84LGVKK149 pKa = 10.26LNLNKK154 pKa = 10.56SILNTDD160 pKa = 4.88FGPCSAEE167 pKa = 3.9FARR170 pKa = 11.84HH171 pKa = 4.76IVRR174 pKa = 11.84DD175 pKa = 3.47GHH177 pKa = 6.84IVGTFSPSLVRR188 pKa = 11.84NIYY191 pKa = 10.53SYY193 pKa = 10.33TDD195 pKa = 3.19VYY197 pKa = 11.69ASIDD201 pKa = 3.63LLRR204 pKa = 11.84EE205 pKa = 4.12VQSKK209 pKa = 10.08LGQVIHH215 pKa = 6.84VYY217 pKa = 10.81EE218 pKa = 4.39NTTLLPIPIVRR229 pKa = 11.84LLKK232 pKa = 9.98TFSFKK237 pKa = 10.93DD238 pKa = 3.33DD239 pKa = 3.61LLAIVTVPLTALKK252 pKa = 10.38LPRR255 pKa = 11.84VYY257 pKa = 10.47HH258 pKa = 5.59PEE260 pKa = 3.92KK261 pKa = 10.9FEE263 pKa = 4.25GDD265 pKa = 3.51PMVGYY270 pKa = 10.73DD271 pKa = 3.52KK272 pKa = 10.83FANPWYY278 pKa = 9.47EE279 pKa = 3.73CDD281 pKa = 3.42INSVNAEE288 pKa = 4.28FGNKK292 pKa = 7.03WMRR295 pKa = 11.84EE296 pKa = 3.4ASLRR300 pKa = 11.84MNKK303 pKa = 10.02LEE305 pKa = 4.32SLLDD309 pKa = 3.57KK310 pKa = 11.24LGDD313 pKa = 4.01GGSTVYY319 pKa = 10.32RR320 pKa = 11.84GRR322 pKa = 11.84LLEE325 pKa = 4.32ISSHH329 pKa = 5.11PLRR332 pKa = 11.84YY333 pKa = 9.47SLKK336 pKa = 8.63PLKK339 pKa = 10.23EE340 pKa = 3.8EE341 pKa = 5.21LMNQFWRR348 pKa = 11.84VMRR351 pKa = 11.84GEE353 pKa = 4.1EE354 pKa = 4.05VPIFSSQLQTDD365 pKa = 3.22IDD367 pKa = 4.22LLIFTLTEE375 pKa = 4.08GKK377 pKa = 9.91SFRR380 pKa = 11.84TWRR383 pKa = 11.84NSKK386 pKa = 7.86TSKK389 pKa = 10.14RR390 pKa = 11.84KK391 pKa = 8.1HH392 pKa = 5.21ACMLIKK398 pKa = 10.35KK399 pKa = 8.04VLKK402 pKa = 9.81EE403 pKa = 3.91SHH405 pKa = 6.03RR406 pKa = 11.84VAAAMKK412 pKa = 8.36EE413 pKa = 4.09LPTTSMSWEE422 pKa = 4.37DD423 pKa = 3.46YY424 pKa = 10.98AKK426 pKa = 10.51QFEE429 pKa = 4.31

Molecular weight: 49.78 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

429

429

429

429.0

49.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.594 ± 0.0

1.166 ± 0.0

5.128 ± 0.0

5.828 ± 0.0

3.963 ± 0.0

5.361 ± 0.0

2.331 ± 0.0

5.361 ± 0.0

7.692 ± 0.0

10.49 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.73 ± 0.0

3.263 ± 0.0

3.73 ± 0.0

2.331 ± 0.0

6.993 ± 0.0

6.527 ± 0.0

6.294 ± 0.0

6.993 ± 0.0

2.564 ± 0.0

4.662 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski