Piloderma croceum (strain F 1598)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Atheliales; Atheliaceae; Piloderma; Piloderma croceum

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 21360 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C3GEX2|A0A0C3GEX2_PILCF Uncharacterized protein OS=Piloderma croceum (strain F 1598) OX=765440 GN=PILCRDRAFT_175946 PE=4 SV=1
MM1 pKa = 8.0DD2 pKa = 5.61LNGSLHH8 pKa = 7.36DD9 pKa = 4.17FFLDD13 pKa = 3.71YY14 pKa = 11.16EE15 pKa = 4.23IDD17 pKa = 3.24QWLNTQGQGDD27 pKa = 4.13GAALEE32 pKa = 4.09QAMAALSNHH41 pKa = 6.77LDD43 pKa = 3.38FADD46 pKa = 3.47WFDD49 pKa = 4.17LLGFNVDD56 pKa = 3.44PNVANRR62 pKa = 11.84AIPGTSSGNEE72 pKa = 3.81APTSPSAPGSTSSQPVSGSTSLQPSATFLNSYY104 pKa = 9.17YY105 pKa = 10.96GSSTTLNLNISAALSMGIPSTSVTNFPISSLPSTVTDD142 pKa = 3.54LTFDD146 pKa = 3.47TVNPVWAHH154 pKa = 6.43LLHH157 pKa = 6.65PTFDD161 pKa = 3.54MAITIALQDD170 pKa = 4.21HH171 pKa = 6.14SLGWLPDD178 pKa = 3.27

Molecular weight: 18.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C3EF86|A0A0C3EF86_PILCF Uncharacterized protein OS=Piloderma croceum (strain F 1598) OX=765440 GN=PILCRDRAFT_830415 PE=4 SV=1
FF1 pKa = 6.99TRR3 pKa = 11.84RR4 pKa = 11.84APNRR8 pKa = 11.84ATTARR13 pKa = 11.84FRR15 pKa = 11.84PFSPNRR21 pKa = 11.84LSLASRR27 pKa = 11.84LRR29 pKa = 11.84TQRR32 pKa = 11.84PTAATASSAPPHH44 pKa = 6.38HH45 pKa = 7.14PPSPFSIPISNGAPEE60 pKa = 4.84IKK62 pKa = 9.75PQRR65 pKa = 11.84LDD67 pKa = 3.47FGFLALGPLSGLAFANAMPHH87 pKa = 5.56HH88 pKa = 6.27HH89 pKa = 7.26HH90 pKa = 6.47NLISTTAPPPFTALHH105 pKa = 5.68PHH107 pKa = 5.39FQRR110 pKa = 11.84RR111 pKa = 11.84ARR113 pKa = 11.84TQAPVAQFRR122 pKa = 11.84VLTLNN127 pKa = 3.52

Molecular weight: 13.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

21351

9

21360

7081032

49

3925

331.5

36.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.902 ± 0.015

1.482 ± 0.007

5.716 ± 0.014

5.585 ± 0.018

3.818 ± 0.012

6.309 ± 0.016

2.802 ± 0.011

5.303 ± 0.014

4.671 ± 0.016

9.341 ± 0.021

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.215 ± 0.007

3.721 ± 0.01

6.145 ± 0.021

3.761 ± 0.011

5.999 ± 0.016

8.765 ± 0.024

6.076 ± 0.011

6.228 ± 0.013

1.481 ± 0.007

2.68 ± 0.009
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski