Torque teno midi virus 12

Taxonomy: Viruses; Anelloviridae; Gammatorquevirus

Average proteome isoelectric point is 7.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A7VLZ6|A7VLZ6_9VIRU Capsid protein OS=Torque teno midi virus 12 OX=2065053 PE=3 SV=1
MM1 pKa = 7.68SIFYY5 pKa = 10.48KK6 pKa = 8.57PAKK9 pKa = 10.01YY10 pKa = 9.94NGHH13 pKa = 6.35TKK15 pKa = 8.88QQMWMSVIADD25 pKa = 3.81FHH27 pKa = 8.93DD28 pKa = 4.2PMCNCWHH35 pKa = 7.12PFGHH39 pKa = 7.09LLDD42 pKa = 4.93IIFPEE47 pKa = 4.28GHH49 pKa = 7.13KK50 pKa = 11.1DD51 pKa = 3.3RR52 pKa = 11.84DD53 pKa = 3.46KK54 pKa = 11.21TIAQIITRR62 pKa = 11.84DD63 pKa = 4.07SKK65 pKa = 10.92CHH67 pKa = 6.45SGGEE71 pKa = 4.18DD72 pKa = 3.11EE73 pKa = 4.96GASGQTEE80 pKa = 3.97DD81 pKa = 4.38LHH83 pKa = 8.65IKK85 pKa = 8.78EE86 pKa = 4.85EE87 pKa = 4.43RR88 pKa = 11.84DD89 pKa = 3.55TPADD93 pKa = 3.6TTGGMAEE100 pKa = 4.51EE101 pKa = 4.45EE102 pKa = 4.36TTDD105 pKa = 3.58ALLAAAVEE113 pKa = 4.28NFEE116 pKa = 4.35RR117 pKa = 5.57

Molecular weight: 13.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A7VLZ6|A7VLZ6_9VIRU Capsid protein OS=Torque teno midi virus 12 OX=2065053 PE=3 SV=1
MM1 pKa = 7.33PFWWRR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84RR10 pKa = 11.84FWTNRR15 pKa = 11.84RR16 pKa = 11.84FTYY19 pKa = 9.93KK20 pKa = 9.74RR21 pKa = 11.84RR22 pKa = 11.84KK23 pKa = 9.45RR24 pKa = 11.84YY25 pKa = 7.52PRR27 pKa = 11.84RR28 pKa = 11.84YY29 pKa = 7.39NRR31 pKa = 11.84RR32 pKa = 11.84YY33 pKa = 9.35GRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84NYY39 pKa = 9.67RR40 pKa = 11.84RR41 pKa = 11.84PARR44 pKa = 11.84RR45 pKa = 11.84RR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84KK49 pKa = 9.07LRR51 pKa = 11.84KK52 pKa = 8.85VRR54 pKa = 11.84RR55 pKa = 11.84KK56 pKa = 9.67KK57 pKa = 10.41KK58 pKa = 10.3QIAVKK63 pKa = 9.38QWQPEE68 pKa = 4.47SITKK72 pKa = 10.26CKK74 pKa = 10.25ILGHH78 pKa = 5.77SALVVGAEE86 pKa = 4.34GKK88 pKa = 10.5QMFCYY93 pKa = 7.45TTNKK97 pKa = 9.88NIAVPPKK104 pKa = 9.63SPYY107 pKa = 9.86GGGFGVEE114 pKa = 4.17QYY116 pKa = 11.19SLNYY120 pKa = 10.23LYY122 pKa = 10.89EE123 pKa = 4.41EE124 pKa = 4.54YY125 pKa = 10.22TFHH128 pKa = 6.8NNYY131 pKa = 5.91WTKK134 pKa = 11.36SNILKK139 pKa = 10.08DD140 pKa = 3.35LCRR143 pKa = 11.84FLWLKK148 pKa = 10.73IIFFRR153 pKa = 11.84DD154 pKa = 2.96NKK156 pKa = 9.83TDD158 pKa = 4.52FIVSYY163 pKa = 10.83DD164 pKa = 3.64RR165 pKa = 11.84NPPFNLTKK173 pKa = 9.64FTYY176 pKa = 10.04PGAHH180 pKa = 6.39PQQMLLQKK188 pKa = 9.62HH189 pKa = 6.17HH190 pKa = 6.91KK191 pKa = 10.16LILSQMTKK199 pKa = 10.66NPNKK203 pKa = 9.05LTKK206 pKa = 9.85KK207 pKa = 10.45FKK209 pKa = 10.38IKK211 pKa = 10.18PPRR214 pKa = 11.84QMISKK219 pKa = 9.26WFFTKK224 pKa = 10.37PFAKK228 pKa = 10.56YY229 pKa = 9.72PLLSLKK235 pKa = 10.68ASALDD240 pKa = 3.81LRR242 pKa = 11.84HH243 pKa = 6.74SYY245 pKa = 10.5LGCCNEE251 pKa = 3.61NSQVYY256 pKa = 8.4FFYY259 pKa = 10.85LNHH262 pKa = 6.54GFYY265 pKa = 10.57KK266 pKa = 8.23QTNWGQYY273 pKa = 7.05STTPYY278 pKa = 10.25RR279 pKa = 11.84PSNEE283 pKa = 3.82INTVYY288 pKa = 11.06YY289 pKa = 10.32KK290 pKa = 11.0DD291 pKa = 3.09KK292 pKa = 10.8TGNKK296 pKa = 8.79KK297 pKa = 10.47QIGPFNTTATAYY309 pKa = 9.95DD310 pKa = 3.89DD311 pKa = 3.83SVSYY315 pKa = 9.97TKK317 pKa = 10.68GYY319 pKa = 8.44FQPPFLQTQFVCTSSMCDD337 pKa = 3.01VKK339 pKa = 11.06AGYY342 pKa = 10.23LPINVAIYY350 pKa = 11.17NPMQDD355 pKa = 3.11SSQGNAIYY363 pKa = 10.29LVSTLTNTWDD373 pKa = 3.6QPPKK377 pKa = 10.47DD378 pKa = 4.08SSILIQGMPIWLGLFGYY395 pKa = 10.32LDD397 pKa = 3.72YY398 pKa = 11.35VRR400 pKa = 11.84QVKK403 pKa = 9.87KK404 pKa = 10.81DD405 pKa = 3.65KK406 pKa = 9.98TWLEE410 pKa = 4.0SHH412 pKa = 6.26VLVLKK417 pKa = 10.87SPAIFTFPQPGADD430 pKa = 2.96AWYY433 pKa = 9.96CPLSKK438 pKa = 9.85TFIDD442 pKa = 4.24GVGPYY447 pKa = 8.78RR448 pKa = 11.84TDD450 pKa = 3.09LTIKK454 pKa = 10.3QKK456 pKa = 10.2EE457 pKa = 3.89RR458 pKa = 11.84WFPQIQHH465 pKa = 5.67QYY467 pKa = 9.72EE468 pKa = 4.07ILNSFVEE475 pKa = 4.63AGPFIPKK482 pKa = 8.38YY483 pKa = 8.7TNQSEE488 pKa = 5.07SNWEE492 pKa = 3.97LKK494 pKa = 10.18FKK496 pKa = 11.14YY497 pKa = 9.58IFHH500 pKa = 6.81FKK502 pKa = 9.76WGGPSLNEE510 pKa = 3.79PDD512 pKa = 3.13ITNPANQDD520 pKa = 3.21QYY522 pKa = 11.93DD523 pKa = 3.91VPDD526 pKa = 3.98TLQQTIQIEE535 pKa = 4.27NPEE538 pKa = 4.15RR539 pKa = 11.84QDD541 pKa = 3.14PRR543 pKa = 11.84SILHH547 pKa = 4.78QWDD550 pKa = 3.39YY551 pKa = 11.42RR552 pKa = 11.84RR553 pKa = 11.84GFIKK557 pKa = 10.29EE558 pKa = 3.72RR559 pKa = 11.84ALKK562 pKa = 10.64RR563 pKa = 11.84MSTYY567 pKa = 10.85LSTPSDD573 pKa = 3.62VPEE576 pKa = 4.62SPEE579 pKa = 3.68HH580 pKa = 5.31TPKK583 pKa = 10.39KK584 pKa = 9.17KK585 pKa = 10.31KK586 pKa = 10.13RR587 pKa = 11.84VGAQLTLPQEE597 pKa = 4.52KK598 pKa = 10.39DD599 pKa = 3.32QEE601 pKa = 4.52TLSCLLSLCKK611 pKa = 10.11EE612 pKa = 4.82DD613 pKa = 5.7IYY615 pKa = 11.24QKK617 pKa = 10.39PQTEE621 pKa = 4.2EE622 pKa = 4.32EE623 pKa = 4.22INQLIQQQQQQQHH636 pKa = 4.32QLKK639 pKa = 10.26RR640 pKa = 11.84DD641 pKa = 3.45ILHH644 pKa = 6.82LMMQIRR650 pKa = 11.84EE651 pKa = 4.1QQQLLQLHH659 pKa = 6.16TGIIPP664 pKa = 3.81

Molecular weight: 79.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1300

117

664

325.0

37.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.154 ± 1.365

1.692 ± 0.19

5.385 ± 0.966

5.615 ± 1.175

4.385 ± 0.632

4.769 ± 0.472

3.923 ± 1.096

5.462 ± 0.298

8.846 ± 0.474

7.077 ± 0.85

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.308 ± 0.584

4.077 ± 0.69

6.154 ± 1.151

6.385 ± 1.17

5.923 ± 0.873

6.692 ± 1.537

8.077 ± 1.103

2.385 ± 0.696

1.846 ± 0.365

3.846 ± 1.411
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski