Chitinophaga ginsengisegetis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Chitinophaga

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6304 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1T5P8N2|A0A1T5P8N2_9BACT TonB-linked outer membrane protein SusC/RagA family OS=Chitinophaga ginsengisegetis OX=393003 GN=SAMN05660461_5005 PE=3 SV=1
MM1 pKa = 8.29DD2 pKa = 3.36IQFDD6 pKa = 3.75EE7 pKa = 4.12RR8 pKa = 11.84TLYY11 pKa = 10.59VKK13 pKa = 10.72YY14 pKa = 10.9DD15 pKa = 3.65EE16 pKa = 6.47DD17 pKa = 3.72IDD19 pKa = 3.94NTIFWEE25 pKa = 4.32DD26 pKa = 3.12VTYY29 pKa = 10.01IAGYY33 pKa = 9.5KK34 pKa = 9.0VYY36 pKa = 10.17AYY38 pKa = 9.43PGEE41 pKa = 3.96AAFLVFKK48 pKa = 10.5TMEE51 pKa = 4.44GEE53 pKa = 4.08TLEE56 pKa = 4.83VSDD59 pKa = 5.62EE60 pKa = 3.98MSGWLEE66 pKa = 3.86LLGGLHH72 pKa = 7.12TIFKK76 pKa = 10.68LPVGWEE82 pKa = 3.85EE83 pKa = 3.8QLADD87 pKa = 4.32SEE89 pKa = 4.67PDD91 pKa = 3.09GDD93 pKa = 5.79DD94 pKa = 2.79IVFYY98 pKa = 10.64TKK100 pKa = 10.9

Molecular weight: 11.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1T5PAA0|A0A1T5PAA0_9BACT Alpha-L-fucosidase OS=Chitinophaga ginsengisegetis OX=393003 GN=SAMN05660461_5062 PE=4 SV=1
MM1 pKa = 7.51KK2 pKa = 10.28KK3 pKa = 10.39VILIICLTAAGIVNAKK19 pKa = 9.47AQAHH23 pKa = 5.7VIVGKK28 pKa = 9.23PVGRR32 pKa = 11.84VVVAPARR39 pKa = 11.84PVIVSLVRR47 pKa = 11.84RR48 pKa = 11.84VVVRR52 pKa = 11.84PVVVVRR58 pKa = 11.84PAVAVVRR65 pKa = 11.84PVARR69 pKa = 11.84GRR71 pKa = 11.84VVVVHH76 pKa = 6.55RR77 pKa = 4.61

Molecular weight: 8.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6304

0

6304

2401850

31

8718

381.0

42.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.194 ± 0.035

0.778 ± 0.01

5.157 ± 0.021

5.28 ± 0.032

4.605 ± 0.019

7.131 ± 0.035

1.949 ± 0.019

6.603 ± 0.026

6.169 ± 0.032

9.482 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.399 ± 0.014

5.325 ± 0.035

4.246 ± 0.018

4.026 ± 0.02

4.345 ± 0.023

6.125 ± 0.025

6.156 ± 0.052

6.482 ± 0.027

1.337 ± 0.012

4.212 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski