Horseradish latent virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Caulimovirus

Average proteome isoelectric point is 7.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q5J1S3|Q5J1S3_9VIRU Protein 3 OS=Horseradish latent virus OX=264076 PE=3 SV=1
MM1 pKa = 7.6PRR3 pKa = 11.84TVGQTIDD10 pKa = 5.02DD11 pKa = 4.01FWSNLGVNQLDD22 pKa = 3.57EE23 pKa = 5.06HH24 pKa = 6.57EE25 pKa = 4.72FDD27 pKa = 5.43LMINLMTDD35 pKa = 3.52DD36 pKa = 5.29DD37 pKa = 4.74VSSDD41 pKa = 3.35TSFDD45 pKa = 3.53SLTSLFSEE53 pKa = 4.72LLQVEE58 pKa = 4.18QEE60 pKa = 4.02ITSEE64 pKa = 4.09EE65 pKa = 4.3EE66 pKa = 3.72RR67 pKa = 11.84CQLLEE72 pKa = 4.96KK73 pKa = 10.21EE74 pKa = 4.54DD75 pKa = 4.37SSDD78 pKa = 3.25EE79 pKa = 4.48SIPNDD84 pKa = 3.34SDD86 pKa = 3.65EE87 pKa = 4.5EE88 pKa = 4.48SVPEE92 pKa = 3.85QVRR95 pKa = 11.84MEE97 pKa = 4.26KK98 pKa = 10.75GKK100 pKa = 11.12GPAKK104 pKa = 10.24PYY106 pKa = 10.65DD107 pKa = 3.69YY108 pKa = 10.89FDD110 pKa = 4.44NEE112 pKa = 4.37SSDD115 pKa = 3.75MEE117 pKa = 4.4YY118 pKa = 11.37GDD120 pKa = 3.98YY121 pKa = 11.13NPYY124 pKa = 10.02GRR126 pKa = 11.84SGQTNKK132 pKa = 9.93PARR135 pKa = 11.84TRR137 pKa = 11.84PKK139 pKa = 10.21LASEE143 pKa = 4.1TLGRR147 pKa = 11.84NPRR150 pKa = 11.84ILNLDD155 pKa = 3.64CTNSLRR161 pKa = 11.84DD162 pKa = 3.36RR163 pKa = 11.84KK164 pKa = 10.38RR165 pKa = 11.84LVEE168 pKa = 3.85EE169 pKa = 4.12WGAEE173 pKa = 3.52ISLTIQTNLDD183 pKa = 3.83EE184 pKa = 5.12YY185 pKa = 11.1SDD187 pKa = 4.16PDD189 pKa = 3.6MVLLLMEE196 pKa = 5.22HH197 pKa = 6.42LTAGSVKK204 pKa = 10.66SFIKK208 pKa = 6.67TTKK211 pKa = 9.21WSEE214 pKa = 3.94LSGGIYY220 pKa = 10.23DD221 pKa = 4.44LVMEE225 pKa = 6.0GIHH228 pKa = 7.11VMFLGEE234 pKa = 4.06QPNEE238 pKa = 4.04AFDD241 pKa = 3.79KK242 pKa = 11.12AKK244 pKa = 10.29EE245 pKa = 3.63QAAAKK250 pKa = 10.23DD251 pKa = 3.91KK252 pKa = 10.58LLKK255 pKa = 9.68MQLCDD260 pKa = 3.12ICSLDD265 pKa = 3.39TFTCAFEE272 pKa = 3.96KK273 pKa = 10.77ALYY276 pKa = 10.25KK277 pKa = 10.3LDD279 pKa = 4.4SGDD282 pKa = 3.73FPPIIEE288 pKa = 4.39QYY290 pKa = 9.43LAKK293 pKa = 10.17IPEE296 pKa = 4.34VGAKK300 pKa = 9.21AQQRR304 pKa = 11.84YY305 pKa = 9.03KK306 pKa = 11.06EE307 pKa = 4.13EE308 pKa = 3.72ATGAMKK314 pKa = 10.83YY315 pKa = 10.76SLGFANKK322 pKa = 9.23IVKK325 pKa = 10.23EE326 pKa = 3.93EE327 pKa = 3.96LKK329 pKa = 10.6KK330 pKa = 10.55VCEE333 pKa = 4.03LTRR336 pKa = 11.84LQKK339 pKa = 10.53KK340 pKa = 9.31LKK342 pKa = 10.06KK343 pKa = 9.95FRR345 pKa = 11.84KK346 pKa = 6.93TCCKK350 pKa = 9.74QVEE353 pKa = 4.15EE354 pKa = 4.15RR355 pKa = 11.84LEE357 pKa = 4.1YY358 pKa = 10.59GCRR361 pKa = 11.84PIYY364 pKa = 9.89KK365 pKa = 9.64KK366 pKa = 10.17KK367 pKa = 10.16SKK369 pKa = 9.87RR370 pKa = 11.84RR371 pKa = 11.84KK372 pKa = 8.48PKK374 pKa = 8.02VRR376 pKa = 11.84KK377 pKa = 7.87YY378 pKa = 10.95KK379 pKa = 10.16KK380 pKa = 8.97YY381 pKa = 10.74KK382 pKa = 8.28PFKK385 pKa = 9.51RR386 pKa = 11.84RR387 pKa = 11.84KK388 pKa = 8.41KK389 pKa = 10.35FKK391 pKa = 7.66TGKK394 pKa = 8.91YY395 pKa = 9.12FRR397 pKa = 11.84PKK399 pKa = 9.62TEE401 pKa = 4.31KK402 pKa = 10.41KK403 pKa = 10.04VCPKK407 pKa = 10.94GKK409 pKa = 10.36GKK411 pKa = 9.66NCKK414 pKa = 9.48CWICNVEE421 pKa = 3.58GHH423 pKa = 6.09YY424 pKa = 11.32ANEE427 pKa = 4.32CPNRR431 pKa = 11.84QTSQKK436 pKa = 10.95AHH438 pKa = 6.98ILQEE442 pKa = 4.56AIQLGLQPVEE452 pKa = 4.2DD453 pKa = 4.23VYY455 pKa = 11.42EE456 pKa = 4.67GEE458 pKa = 4.1QEE460 pKa = 4.3VFVIEE465 pKa = 4.26YY466 pKa = 10.22IEE468 pKa = 4.09VSEE471 pKa = 5.27DD472 pKa = 3.36EE473 pKa = 4.57TSTSEE478 pKa = 4.98DD479 pKa = 3.73DD480 pKa = 3.79GTSTSEE486 pKa = 5.44DD487 pKa = 3.49SDD489 pKa = 3.85SDD491 pKa = 3.58

Molecular weight: 56.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K0DKX7|K0DKX7_9VIRU Uncharacterized protein OS=Horseradish latent virus OX=264076 PE=4 SV=1
MM1 pKa = 7.84KK2 pKa = 10.41DD3 pKa = 3.23NEE5 pKa = 4.52KK6 pKa = 10.02TGSSDD11 pKa = 3.37GHH13 pKa = 6.82CSGQIYY19 pKa = 10.81LNLLILSLRR28 pKa = 11.84RR29 pKa = 11.84LTLISGSKK37 pKa = 10.4GLLINPYY44 pKa = 7.57QFKK47 pKa = 10.6ILLIKK52 pKa = 10.23KK53 pKa = 8.28LNKK56 pKa = 8.75WFKK59 pKa = 9.05CHH61 pKa = 6.8KK62 pKa = 8.93STFRR66 pKa = 11.84STNLVVQKK74 pKa = 10.6LVSEE78 pKa = 4.52PP79 pKa = 3.46

Molecular weight: 9.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2435

60

679

304.4

34.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.6 ± 0.489

1.889 ± 0.255

5.298 ± 0.459

7.885 ± 0.719

3.901 ± 0.493

4.969 ± 0.19

1.725 ± 0.365

7.351 ± 0.72

10.554 ± 0.551

8.665 ± 0.647

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.177 ± 0.194

5.421 ± 0.623

4.6 ± 0.519

4.23 ± 0.493

4.312 ± 0.409

7.598 ± 0.717

5.955 ± 0.563

4.887 ± 0.202

0.821 ± 0.173

3.162 ± 0.313
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski