Arthrobacter phage DrYang

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Klausavirus; Arthrobacter virus DrYang

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 105 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6B9J7J1|A0A6B9J7J1_9CAUD Uncharacterized protein OS=Arthrobacter phage DrYang OX=2686080 GN=52 PE=4 SV=1
MM1 pKa = 6.71TTTFEE6 pKa = 3.86EE7 pKa = 3.96ARR9 pKa = 11.84AIVLEE14 pKa = 3.99QNRR17 pKa = 11.84EE18 pKa = 3.65GWEE21 pKa = 3.94EE22 pKa = 3.78DD23 pKa = 3.29HH24 pKa = 7.19EE25 pKa = 5.03GTFTVAAYY33 pKa = 9.77GWEE36 pKa = 4.12DD37 pKa = 3.41DD38 pKa = 4.04AGFLVVQGAHH48 pKa = 5.3EE49 pKa = 4.15WLVDD53 pKa = 3.37GDD55 pKa = 3.89EE56 pKa = 4.86TYY58 pKa = 11.62SVMDD62 pKa = 4.26APAVFVSKK70 pKa = 10.95DD71 pKa = 3.15DD72 pKa = 3.95GTILEE77 pKa = 4.46ADD79 pKa = 3.98YY80 pKa = 11.43LDD82 pKa = 3.79VADD85 pKa = 6.3RR86 pKa = 11.84IAAMTPVPGHH96 pKa = 6.77EE97 pKa = 4.23YY98 pKa = 10.68TEE100 pKa = 4.52DD101 pKa = 3.17

Molecular weight: 11.23 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6B9JC39|A0A6B9JC39_9CAUD Protease OS=Arthrobacter phage DrYang OX=2686080 GN=104 PE=4 SV=1
MM1 pKa = 7.24TSYY4 pKa = 11.29RR5 pKa = 11.84DD6 pKa = 3.19TSTRR10 pKa = 11.84KK11 pKa = 9.15HH12 pKa = 5.04ATTGRR17 pKa = 11.84RR18 pKa = 11.84AADD21 pKa = 3.55YY22 pKa = 9.55TPAPLEE28 pKa = 3.96PRR30 pKa = 11.84KK31 pKa = 10.42GRR33 pKa = 11.84GPGKK37 pKa = 9.4PKK39 pKa = 9.71PVEE42 pKa = 3.89RR43 pKa = 11.84KK44 pKa = 8.73EE45 pKa = 3.39QDD47 pKa = 2.89RR48 pKa = 11.84RR49 pKa = 11.84HH50 pKa = 5.76DD51 pKa = 3.52HH52 pKa = 6.28

Molecular weight: 6.0 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

105

0

105

21996

32

1256

209.5

22.73

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.366 ± 0.494

0.796 ± 0.109

5.815 ± 0.159

6.165 ± 0.368

2.855 ± 0.156

8.256 ± 0.269

2.26 ± 0.186

3.86 ± 0.21

4.314 ± 0.234

7.642 ± 0.235

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.319 ± 0.099

3.819 ± 0.155

5.947 ± 0.24

3.382 ± 0.14

6.033 ± 0.262

4.965 ± 0.271

7.488 ± 0.305

7.46 ± 0.236

1.809 ± 0.141

2.45 ± 0.158
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski