Sodalis-like symbiont of Bactericera trigonica

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Bruguierivoracaceae; Sodalis; unclassified Sodalis

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1308 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3L7LSW5|A0A3L7LSW5_9GAMM Tail fiber domain-containing protein OS=Sodalis-like symbiont of Bactericera trigonica OX=2420513 GN=D8L93_03515 PE=4 SV=1
MM1 pKa = 7.59SEE3 pKa = 3.98QNNTEE8 pKa = 3.55IAFQIQRR15 pKa = 11.84IYY17 pKa = 10.13TKK19 pKa = 10.3DD20 pKa = 3.43VSFEE24 pKa = 4.02APNAPKK30 pKa = 10.45VFQQEE35 pKa = 3.95WQPEE39 pKa = 4.07IKK41 pKa = 10.36LDD43 pKa = 3.84LDD45 pKa = 3.92TASSQLAEE53 pKa = 5.2DD54 pKa = 3.5IYY56 pKa = 11.2EE57 pKa = 4.09VVLRR61 pKa = 11.84VTVTATLGEE70 pKa = 4.28DD71 pKa = 3.3TAFLCEE77 pKa = 4.07VQQAGIFTISGIDD90 pKa = 3.54STQMAHH96 pKa = 7.17CLGAYY101 pKa = 9.19CPNILFSYY109 pKa = 10.31ARR111 pKa = 11.84EE112 pKa = 4.45CITSQVSRR120 pKa = 11.84GTFPQLNLAPVNFDD134 pKa = 3.79TLFMNYY140 pKa = 9.3LQQQAAGVGSQPXQDD155 pKa = 4.1DD156 pKa = 3.37

Molecular weight: 17.24 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3L7LS07|A0A3L7LS07_9GAMM Imidazole glycerol phosphate synthase subunit HisH OS=Sodalis-like symbiont of Bactericera trigonica OX=2420513 GN=hisH PE=3 SV=1
MM1 pKa = 7.29ATQARR6 pKa = 11.84QSWPRR11 pKa = 11.84TSPTGDD17 pKa = 3.03AARR20 pKa = 11.84NNVCLFVANDD30 pKa = 4.07LEE32 pKa = 4.69YY33 pKa = 10.24PLPDD37 pKa = 2.99HH38 pKa = 6.53VFRR41 pKa = 11.84GTLLPTPLSPWCRR54 pKa = 11.84VANVRR59 pKa = 11.84QGVLVLEE66 pKa = 4.48TANASWKK73 pKa = 9.02MRR75 pKa = 11.84LRR77 pKa = 11.84YY78 pKa = 7.44EE79 pKa = 4.17QPRR82 pKa = 11.84LLSALRR88 pKa = 11.84AQILPSLSSIDD99 pKa = 3.36IRR101 pKa = 11.84INPSMARR108 pKa = 11.84KK109 pKa = 9.49QEE111 pKa = 4.16LNAQNKK117 pKa = 10.12DD118 pKa = 2.89SGQQLDD124 pKa = 4.15RR125 pKa = 11.84PPGEE129 pKa = 3.82KK130 pKa = 9.48PRR132 pKa = 11.84RR133 pKa = 11.84LSVQSAASIRR143 pKa = 11.84HH144 pKa = 3.98VAEE147 pKa = 3.98RR148 pKa = 11.84SEE150 pKa = 4.52GKK152 pKa = 10.12LKK154 pKa = 10.85NALEE158 pKa = 4.21RR159 pKa = 11.84LAEE162 pKa = 3.99LASRR166 pKa = 11.84RR167 pKa = 11.84EE168 pKa = 4.18CQPRR172 pKa = 11.84PP173 pKa = 3.39

Molecular weight: 19.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1308

0

1308

230015

21

1271

175.9

19.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.305 ± 0.096

1.244 ± 0.028

5.311 ± 0.053

5.441 ± 0.077

3.462 ± 0.05

7.386 ± 0.081

2.419 ± 0.038

5.485 ± 0.065

3.964 ± 0.072

11.135 ± 0.097

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.742 ± 0.042

3.358 ± 0.044

4.509 ± 0.048

4.606 ± 0.069

6.863 ± 0.067

5.623 ± 0.063

5.091 ± 0.058

6.956 ± 0.075

1.327 ± 0.037

2.739 ± 0.05
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski