Labilibacter sediminis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Bacteroidia; Marinilabiliales; Marinilabiliaceae; Labilibacter

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4598 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5R9RDP8|A0A5R9RDP8_9BACT PAS domain S-box protein OS=Labilibacter sediminis OX=2570926 GN=E9993_19015 PE=4 SV=1
MM1 pKa = 7.19YY2 pKa = 10.17LIKK5 pKa = 10.45FIDD8 pKa = 3.32MHH10 pKa = 7.87KK11 pKa = 10.14IIIYY15 pKa = 9.67GFLMLIALSACDD27 pKa = 5.08DD28 pKa = 3.89VNKK31 pKa = 10.36LQLGEE36 pKa = 3.92ITNPVLSSEE45 pKa = 4.52VANKK49 pKa = 9.65TIVLTDD55 pKa = 3.5EE56 pKa = 4.61TSDD59 pKa = 3.41EE60 pKa = 4.34AFDD63 pKa = 3.83SFEE66 pKa = 3.71WTIADD71 pKa = 4.07FGFPSADD78 pKa = 3.35PEE80 pKa = 4.31YY81 pKa = 9.27TLQMDD86 pKa = 4.08FEE88 pKa = 6.17GNDD91 pKa = 3.55FQSAIALVTTFDD103 pKa = 5.1LKK105 pKa = 11.26LDD107 pKa = 4.45TINALINQKK116 pKa = 10.56LITLGAEE123 pKa = 3.78PGVATKK129 pKa = 11.08LEE131 pKa = 4.36FKK133 pKa = 10.02VTGSVHH139 pKa = 6.49NDD141 pKa = 3.13VIAEE145 pKa = 4.25SNVLSATITPYY156 pKa = 10.66EE157 pKa = 4.65IILVYY162 pKa = 9.79PKK164 pKa = 10.12IYY166 pKa = 9.55VTGDD170 pKa = 3.03QNGWSFIEE178 pKa = 5.31DD179 pKa = 3.5DD180 pKa = 4.17LLYY183 pKa = 10.8SVSDD187 pKa = 3.57NEE189 pKa = 3.89IFEE192 pKa = 4.73GYY194 pKa = 10.13IYY196 pKa = 10.24MGADD200 pKa = 3.14NYY202 pKa = 11.04FKK204 pKa = 10.38MSYY207 pKa = 8.96QPNWDD212 pKa = 3.6SADD215 pKa = 4.15AIIGDD220 pKa = 4.27PDD222 pKa = 3.62ASGTTGNLQVGNWGGNNIFAPDD244 pKa = 3.46GAGVYY249 pKa = 9.48FIKK252 pKa = 10.91ANIPNFTYY260 pKa = 10.41SIYY263 pKa = 8.77KK264 pKa = 8.42TEE266 pKa = 3.81WAITGDD272 pKa = 3.55FTSWGFAPMTYY283 pKa = 10.57DD284 pKa = 3.45EE285 pKa = 6.23ASDD288 pKa = 3.73TWSLTADD295 pKa = 3.38VTAGGFKK302 pKa = 10.59FIANEE307 pKa = 3.8DD308 pKa = 3.22WSKK311 pKa = 11.53VKK313 pKa = 10.61GDD315 pKa = 3.67NEE317 pKa = 3.96MDD319 pKa = 4.77GILDD323 pKa = 4.37KK324 pKa = 11.18GTDD327 pKa = 3.37EE328 pKa = 4.19NNIVIAEE335 pKa = 4.3DD336 pKa = 3.51GNYY339 pKa = 9.35TITMDD344 pKa = 4.94LSQALYY350 pKa = 9.36TYY352 pKa = 10.99SVVKK356 pKa = 11.0NNN358 pKa = 3.42

Molecular weight: 39.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5R9R1D2|A0A5R9R1D2_9BACT DUF1080 domain-containing protein OS=Labilibacter sediminis OX=2570926 GN=E9993_05745 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84KK11 pKa = 8.89RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 10.2HH16 pKa = 3.67GFKK19 pKa = 10.92ARR21 pKa = 11.84MASANGRR28 pKa = 11.84KK29 pKa = 9.04VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.01GRR39 pKa = 11.84KK40 pKa = 8.51KK41 pKa = 10.08LTVSSEE47 pKa = 3.96KK48 pKa = 10.05RR49 pKa = 11.84HH50 pKa = 5.48KK51 pKa = 10.69AA52 pKa = 3.17

Molecular weight: 6.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4598

0

4598

1764307

17

6966

383.7

43.34

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.016 ± 0.034

0.923 ± 0.012

5.735 ± 0.028

6.604 ± 0.031

4.907 ± 0.024

6.678 ± 0.037

1.949 ± 0.017

7.779 ± 0.038

7.559 ± 0.047

8.921 ± 0.039

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.346 ± 0.019

6.14 ± 0.034

3.498 ± 0.02

3.349 ± 0.018

3.497 ± 0.022

6.756 ± 0.03

5.322 ± 0.04

6.452 ± 0.03

1.238 ± 0.015

4.331 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski