Equus caballus papillomavirus 8

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Treiskappapapillomavirus; Treiskappapapillomavirus 1

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1D9EPU1|A0A1D9EPU1_9PAPI Replication protein E1 OS=Equus caballus papillomavirus 8 OX=1912759 GN=E1 PE=3 SV=1
MM1 pKa = 7.99RR2 pKa = 11.84GRR4 pKa = 11.84NVTLRR9 pKa = 11.84DD10 pKa = 3.17IVLEE14 pKa = 3.95EE15 pKa = 4.12RR16 pKa = 11.84PQLVDD21 pKa = 3.4LHH23 pKa = 8.17CDD25 pKa = 3.16EE26 pKa = 4.53QLPPEE31 pKa = 4.28EE32 pKa = 4.55EE33 pKa = 4.18EE34 pKa = 4.49EE35 pKa = 4.03EE36 pKa = 4.28VANYY40 pKa = 10.49EE41 pKa = 4.25EE42 pKa = 4.67VVEE45 pKa = 4.12VTPYY49 pKa = 10.33RR50 pKa = 11.84VALPCGVCASPLRR63 pKa = 11.84LFIQATDD70 pKa = 3.15EE71 pKa = 4.12GRR73 pKa = 11.84RR74 pKa = 11.84GLEE77 pKa = 3.48LLLFRR82 pKa = 11.84DD83 pKa = 4.26LAIICPSCARR93 pKa = 11.84NEE95 pKa = 4.25TRR97 pKa = 11.84HH98 pKa = 5.13EE99 pKa = 4.01

Molecular weight: 11.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1D9EPW8|A0A1D9EPW8_9PAPI Regulatory protein E2 OS=Equus caballus papillomavirus 8 OX=1912759 GN=E2 PE=3 SV=1
MM1 pKa = 7.47EE2 pKa = 5.5RR3 pKa = 11.84PRR5 pKa = 11.84TLTDD9 pKa = 3.67LSRR12 pKa = 11.84QLGLGLTEE20 pKa = 5.64INIQCIFCKK29 pKa = 10.37FWLRR33 pKa = 11.84RR34 pKa = 11.84IDD36 pKa = 3.56LSTFIRR42 pKa = 11.84KK43 pKa = 8.81SLNLAWRR50 pKa = 11.84GGYY53 pKa = 9.39PYY55 pKa = 10.58ACCRR59 pKa = 11.84SCSKK63 pKa = 10.87VIAEE67 pKa = 4.34RR68 pKa = 11.84EE69 pKa = 3.85RR70 pKa = 11.84NQYY73 pKa = 10.85YY74 pKa = 7.11EE75 pKa = 4.29TSAKK79 pKa = 9.61GPRR82 pKa = 11.84VEE84 pKa = 4.48RR85 pKa = 11.84LHH87 pKa = 6.19GRR89 pKa = 11.84PIGEE93 pKa = 3.72IAVRR97 pKa = 11.84CILCLSLLSYY107 pKa = 10.14FEE109 pKa = 4.12KK110 pKa = 10.69VDD112 pKa = 3.8VIEE115 pKa = 4.89RR116 pKa = 11.84GEE118 pKa = 3.88SFYY121 pKa = 10.9RR122 pKa = 11.84VRR124 pKa = 11.84DD125 pKa = 3.4RR126 pKa = 11.84WRR128 pKa = 11.84AKK130 pKa = 10.23CRR132 pKa = 11.84EE133 pKa = 4.0CRR135 pKa = 11.84AQQDD139 pKa = 2.96ARR141 pKa = 11.84AA142 pKa = 3.76

Molecular weight: 16.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2560

99

709

426.7

47.09

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.797 ± 0.65

2.07 ± 0.537

5.234 ± 0.614

5.938 ± 0.71

3.789 ± 0.48

8.945 ± 1.422

2.266 ± 0.288

2.969 ± 0.712

3.477 ± 0.655

8.438 ± 0.423

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.523 ± 0.379

3.086 ± 0.461

8.516 ± 1.568

4.883 ± 0.773

7.383 ± 0.757

8.281 ± 0.799

5.469 ± 0.402

6.406 ± 0.922

1.953 ± 0.298

2.578 ± 0.3
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski