Rhodocytophaga rosea

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Rhodocytophaga

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6909 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6C0GHA4|A0A6C0GHA4_9BACT FtsX-like permease family protein OS=Rhodocytophaga rosea OX=2704465 GN=GXP67_12395 PE=4 SV=1
MM1 pKa = 6.15QTFYY5 pKa = 11.4LKK7 pKa = 10.75NEE9 pKa = 4.22YY10 pKa = 10.44EE11 pKa = 4.52DD12 pKa = 3.45GTVFFKK18 pKa = 10.55IEE20 pKa = 4.31KK21 pKa = 8.81IQNPEE26 pKa = 3.62DD27 pKa = 3.67EE28 pKa = 4.78YY29 pKa = 10.72IYY31 pKa = 10.88DD32 pKa = 3.53GTEE35 pKa = 3.4IMIEE39 pKa = 3.96EE40 pKa = 4.1DD41 pKa = 3.72TISKK45 pKa = 10.68DD46 pKa = 3.31EE47 pKa = 4.27YY48 pKa = 10.91EE49 pKa = 4.28LTEE52 pKa = 4.19EE53 pKa = 4.99DD54 pKa = 4.02LQEE57 pKa = 4.26MYY59 pKa = 11.19DD60 pKa = 3.8DD61 pKa = 4.28GFEE64 pKa = 4.19VVPAAEE70 pKa = 4.14YY71 pKa = 10.37EE72 pKa = 4.28EE73 pKa = 4.45ADD75 pKa = 4.36RR76 pKa = 11.84RR77 pKa = 11.84HH78 pKa = 5.69QSLDD82 pKa = 3.27LL83 pKa = 4.37

Molecular weight: 9.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6C0GL21|A0A6C0GL21_9BACT Ribosomal RNA small subunit methyltransferase G OS=Rhodocytophaga rosea OX=2704465 GN=rsmG PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.54RR3 pKa = 11.84TFQPSQRR10 pKa = 11.84KK11 pKa = 8.72RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.3HH16 pKa = 3.94GFRR19 pKa = 11.84EE20 pKa = 4.19RR21 pKa = 11.84MATANGRR28 pKa = 11.84RR29 pKa = 11.84VLASRR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.99GRR39 pKa = 11.84KK40 pKa = 7.37NN41 pKa = 3.11

Molecular weight: 4.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6909

0

6909

2421566

25

5275

350.5

39.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.29 ± 0.026

0.79 ± 0.01

4.865 ± 0.022

6.0 ± 0.032

4.822 ± 0.02

6.704 ± 0.031

1.986 ± 0.016

7.211 ± 0.029

6.593 ± 0.034

9.736 ± 0.037

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.219 ± 0.014

5.164 ± 0.03

3.993 ± 0.018

4.411 ± 0.022

4.077 ± 0.02

6.558 ± 0.03

5.987 ± 0.044

6.229 ± 0.025

1.264 ± 0.013

4.1 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski