Torque teno midi virus 6

Taxonomy: Viruses; Anelloviridae; Gammatorquevirus

Average proteome isoelectric point is 7.07

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A7VLW0|A7VLW0_9VIRU Capsid protein OS=Torque teno midi virus 6 OX=2065047 PE=3 SV=1
MM1 pKa = 7.13QNISAEE7 pKa = 4.14DD8 pKa = 4.34FYY10 pKa = 11.74KK11 pKa = 9.89EE12 pKa = 3.77THH14 pKa = 5.91FNQVTKK20 pKa = 10.09HH21 pKa = 4.95QLWMSIVTDD30 pKa = 3.48AHH32 pKa = 7.37DD33 pKa = 3.92SVCNCWHH40 pKa = 7.21PFAHH44 pKa = 6.13MLANIFPPGHH54 pKa = 7.2KK55 pKa = 10.11DD56 pKa = 3.09RR57 pKa = 11.84NLTINQILEE66 pKa = 4.12RR67 pKa = 11.84DD68 pKa = 3.96LKK70 pKa = 9.31EE71 pKa = 3.99TWPSGGDD78 pKa = 3.01ADD80 pKa = 4.49ASHH83 pKa = 6.68GLVAGEE89 pKa = 4.25DD90 pKa = 3.38TGGEE94 pKa = 3.91QIINPEE100 pKa = 4.16EE101 pKa = 4.38KK102 pKa = 9.96EE103 pKa = 3.83EE104 pKa = 4.08EE105 pKa = 4.31YY106 pKa = 10.57IEE108 pKa = 5.11DD109 pKa = 3.84EE110 pKa = 5.11EE111 pKa = 4.32ITEE114 pKa = 4.26LLKK117 pKa = 11.03AADD120 pKa = 3.72VAATRR125 pKa = 4.11

Molecular weight: 14.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A7VLW0|A7VLW0_9VIRU Capsid protein OS=Torque teno midi virus 6 OX=2065047 PE=3 SV=1
MM1 pKa = 7.28AFWWRR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 8.65PWFGRR15 pKa = 11.84WRR17 pKa = 11.84RR18 pKa = 11.84YY19 pKa = 8.61RR20 pKa = 11.84RR21 pKa = 11.84RR22 pKa = 11.84TNYY25 pKa = 9.37KK26 pKa = 8.32PRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 9.42RR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84IYY35 pKa = 10.01RR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84NYY41 pKa = 8.44RR42 pKa = 11.84TTKK45 pKa = 8.14GRR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84RR50 pKa = 11.84RR51 pKa = 11.84YY52 pKa = 8.58KK53 pKa = 10.44VRR55 pKa = 11.84RR56 pKa = 11.84KK57 pKa = 6.7QQKK60 pKa = 9.41ILVKK64 pKa = 9.89QWQPEE69 pKa = 4.43CIRR72 pKa = 11.84KK73 pKa = 9.54CKK75 pKa = 10.19IKK77 pKa = 10.83GLGTIVLGAEE87 pKa = 4.3GTQYY91 pKa = 10.98RR92 pKa = 11.84CYY94 pKa = 10.45TDD96 pKa = 5.86YY97 pKa = 11.43LDD99 pKa = 3.85EE100 pKa = 4.2WTNPKK105 pKa = 10.05VPGGGGFGCEE115 pKa = 4.06LFTLRR120 pKa = 11.84YY121 pKa = 8.47LYY123 pKa = 11.14KK124 pKa = 10.04MYY126 pKa = 10.65LARR129 pKa = 11.84KK130 pKa = 8.94NIWTFSNKK138 pKa = 9.81YY139 pKa = 9.31KK140 pKa = 10.9DD141 pKa = 3.52LVRR144 pKa = 11.84YY145 pKa = 7.41TGTRR149 pKa = 11.84FTFFRR154 pKa = 11.84HH155 pKa = 6.31PEE157 pKa = 3.7TDD159 pKa = 4.1FILAYY164 pKa = 10.21DD165 pKa = 4.06IQPPFHH171 pKa = 5.84ITKK174 pKa = 6.88WTYY177 pKa = 10.62MSIHH181 pKa = 6.44PQMLLLRR188 pKa = 11.84KK189 pKa = 9.18HH190 pKa = 6.28KK191 pKa = 10.52KK192 pKa = 10.08LLLSTATKK200 pKa = 10.5PNGKK204 pKa = 8.62LTTRR208 pKa = 11.84FKK210 pKa = 10.59IRR212 pKa = 11.84PPKK215 pKa = 10.19QLVTKK220 pKa = 9.8WFFQKK225 pKa = 10.77DD226 pKa = 3.34FAQYY230 pKa = 11.02GLVAIAAAACNLRR243 pKa = 11.84YY244 pKa = 8.88PWLACCNEE252 pKa = 3.76NLIITLRR259 pKa = 11.84YY260 pKa = 8.61LQPQFYY266 pKa = 10.15HH267 pKa = 6.29NSAWAQTTKK276 pKa = 10.51EE277 pKa = 4.02YY278 pKa = 11.15NPVYY282 pKa = 9.47GTQPMKK288 pKa = 10.16KK289 pKa = 7.61TLTFNYY295 pKa = 9.85IIGNQRR301 pKa = 11.84GTYY304 pKa = 8.84TMSNSDD310 pKa = 2.83ISDD313 pKa = 3.55YY314 pKa = 11.21DD315 pKa = 3.84SSVSISKK322 pKa = 9.91GWFQPKK328 pKa = 9.4ILNAYY333 pKa = 6.6EE334 pKa = 4.4VKK336 pKa = 10.85DD337 pKa = 3.7NTVTQALTPCGVLRR351 pKa = 11.84YY352 pKa = 10.05NPADD356 pKa = 5.09DD357 pKa = 5.84DD358 pKa = 4.4GQGNKK363 pKa = 9.21LWVVNTLTYY372 pKa = 9.76NWKK375 pKa = 10.17IPTDD379 pKa = 3.83DD380 pKa = 4.34DD381 pKa = 5.51LILEE385 pKa = 5.53GYY387 pKa = 8.49PLWLMLYY394 pKa = 9.85GYY396 pKa = 9.17TSFLYY401 pKa = 9.84QVKK404 pKa = 10.29ADD406 pKa = 4.07KK407 pKa = 11.4NPFSSSLIVVKK418 pKa = 10.6SSALQRR424 pKa = 11.84VFGTDD429 pKa = 2.9TTGWYY434 pKa = 9.53PLIDD438 pKa = 3.66KK439 pKa = 10.98SFMDD443 pKa = 4.21GKK445 pKa = 11.22GPGNTDD451 pKa = 4.17PILLHH456 pKa = 6.26RR457 pKa = 11.84KK458 pKa = 7.66YY459 pKa = 9.57WYY461 pKa = 9.27PSLYY465 pKa = 9.75GQRR468 pKa = 11.84DD469 pKa = 4.12SISQLVNCGPYY480 pKa = 8.62VPKK483 pKa = 11.01YY484 pKa = 10.85NEE486 pKa = 4.45TKK488 pKa = 10.85NSTWQCNYY496 pKa = 10.43KK497 pKa = 9.02YY498 pKa = 9.33TFYY501 pKa = 10.82FKK503 pKa = 10.18WGGHH507 pKa = 5.01YY508 pKa = 10.29PPEE511 pKa = 4.12QEE513 pKa = 5.03AEE515 pKa = 4.05NPEE518 pKa = 4.15KK519 pKa = 10.98KK520 pKa = 10.27NIYY523 pKa = 8.91PVPDD527 pKa = 3.6KK528 pKa = 10.81QQEE531 pKa = 4.51TISIADD537 pKa = 4.7PISEE541 pKa = 4.5KK542 pKa = 10.52YY543 pKa = 9.42DD544 pKa = 3.41TVFRR548 pKa = 11.84SWDD551 pKa = 3.37YY552 pKa = 11.36RR553 pKa = 11.84RR554 pKa = 11.84GSLTRR559 pKa = 11.84TAIKK563 pKa = 10.34RR564 pKa = 11.84MQEE567 pKa = 3.77NLEE570 pKa = 4.11SDD572 pKa = 3.73EE573 pKa = 4.51SLSTDD578 pKa = 3.66SAGCSSKK585 pKa = 10.67KK586 pKa = 9.21KK587 pKa = 10.34KK588 pKa = 10.22KK589 pKa = 10.2YY590 pKa = 10.65LPTLQDD596 pKa = 3.22PKK598 pKa = 10.97KK599 pKa = 9.97EE600 pKa = 3.88NKK602 pKa = 9.64EE603 pKa = 3.77IQKK606 pKa = 10.43CLLSLCEE613 pKa = 3.99EE614 pKa = 4.51NTWQEE619 pKa = 4.02PPQDD623 pKa = 4.09SNILQLLQQQHH634 pKa = 5.14QQQQSIKK641 pKa = 10.19QNLLTLIADD650 pKa = 4.66LKK652 pKa = 10.7AKK654 pKa = 9.63QRR656 pKa = 11.84NLLHH660 pKa = 4.72QTGYY664 pKa = 10.74LAA666 pKa = 5.21

Molecular weight: 78.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1322

125

666

330.5

38.4

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.976 ± 1.478

1.664 ± 0.212

4.841 ± 0.463

6.43 ± 1.872

3.555 ± 0.649

4.614 ± 0.585

3.026 ± 1.131

5.144 ± 0.389

8.396 ± 0.768

8.018 ± 0.77

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.74 ± 0.257

5.144 ± 0.098

5.976 ± 1.087

5.673 ± 0.774

6.278 ± 1.07

6.051 ± 1.657

7.564 ± 0.376

3.177 ± 0.208

2.345 ± 0.609

4.387 ± 1.687
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski