Capybara microvirus Cap1_SP_160

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 7.06

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W810|A0A4P8W810_9VIRU Nonstructural protein OS=Capybara microvirus Cap1_SP_160 OX=2585396 PE=4 SV=1
MM1 pKa = 7.71RR2 pKa = 11.84SVHH5 pKa = 5.51TQPSLNSIEE14 pKa = 4.21LALMTVARR22 pKa = 11.84SALILASPCPSAFSLICEE40 pKa = 3.94VSMQFRR46 pKa = 11.84NSFTRR51 pKa = 11.84VRR53 pKa = 11.84VPAPACSDD61 pKa = 3.52SLTVQSEE68 pKa = 4.03ADD70 pKa = 3.41SCEE73 pKa = 3.13IGYY76 pKa = 9.59ILNQHH81 pKa = 5.14VRR83 pKa = 11.84GLPVVGNALPPMWQDD98 pKa = 2.87NTALPDD104 pKa = 3.5YY105 pKa = 11.07LEE107 pKa = 4.24AQNRR111 pKa = 11.84VVSARR116 pKa = 11.84QSFEE120 pKa = 4.02ALPSAIRR127 pKa = 11.84ARR129 pKa = 11.84FRR131 pKa = 11.84NDD133 pKa = 3.3PLEE136 pKa = 3.9MLRR139 pKa = 11.84FLSDD143 pKa = 3.09AEE145 pKa = 4.15NRR147 pKa = 11.84SEE149 pKa = 4.04AVRR152 pKa = 11.84LGLVDD157 pKa = 5.06DD158 pKa = 5.0KK159 pKa = 10.46PTAVTAEE166 pKa = 4.37KK167 pKa = 10.26PSASADD173 pKa = 3.4AAQVPSTT180 pKa = 4.0

Molecular weight: 19.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W7Z6|A0A4P8W7Z6_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_160 OX=2585396 PE=4 SV=1
MM1 pKa = 7.64GFGKK5 pKa = 10.09SFKK8 pKa = 10.55KK9 pKa = 9.78IAKK12 pKa = 9.17KK13 pKa = 9.28VEE15 pKa = 3.48RR16 pKa = 11.84VYY18 pKa = 11.23RR19 pKa = 11.84NGRR22 pKa = 11.84NAIPGYY28 pKa = 9.87KK29 pKa = 9.69QIFRR33 pKa = 11.84SKK35 pKa = 9.92PYY37 pKa = 10.35KK38 pKa = 10.17KK39 pKa = 10.05LQHH42 pKa = 5.88LVKK45 pKa = 10.71KK46 pKa = 10.65KK47 pKa = 10.96GIDD50 pKa = 3.28KK51 pKa = 10.72AKK53 pKa = 10.6KK54 pKa = 9.16LGKK57 pKa = 10.24ALFSPATTGGTAVIASYY74 pKa = 10.47GANSAVAANRR84 pKa = 11.84RR85 pKa = 11.84TLSQMTGGNN94 pKa = 3.51

Molecular weight: 10.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1458

83

548

243.0

27.12

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.436 ± 1.822

1.715 ± 0.569

5.898 ± 0.495

4.733 ± 0.703

5.281 ± 1.048

6.104 ± 0.726

1.852 ± 0.472

3.909 ± 0.5

5.624 ± 1.716

8.848 ± 0.406

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.058 ± 0.22

5.007 ± 0.684

5.007 ± 0.484

3.772 ± 0.581

6.584 ± 0.794

9.739 ± 1.081

3.772 ± 0.446

7.064 ± 0.98

1.029 ± 0.248

3.567 ± 0.798
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski