Acidovorax sp.

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax; unclassified Acidovorax

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5416 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A519LSR5|A0A519LSR5_9BURK M23 family metallopeptidase OS=Acidovorax sp. OX=1872122 GN=EON49_24040 PE=4 SV=1
MM1 pKa = 7.42SLNYY5 pKa = 10.28LDD7 pKa = 5.18FDD9 pKa = 4.26YY10 pKa = 11.66SEE12 pKa = 5.41DD13 pKa = 4.23DD14 pKa = 3.65EE15 pKa = 4.88GTGTFDD21 pKa = 4.43AMASVLPAQLAALHH35 pKa = 6.63AEE37 pKa = 4.54VAQVLQWAHH46 pKa = 6.26SEE48 pKa = 4.27FPDD51 pKa = 3.48ACGPSEE57 pKa = 6.53DD58 pKa = 4.12GGQWQYY64 pKa = 12.08DD65 pKa = 3.73LQGVQDD71 pKa = 3.77VSTSLVLDD79 pKa = 4.11FDD81 pKa = 4.32AATGSIHH88 pKa = 6.58SAPGTPAPPRR98 pKa = 11.84TTLTLSVSGSKK109 pKa = 10.37DD110 pKa = 2.91FCAALRR116 pKa = 11.84NAFGISS122 pKa = 3.12

Molecular weight: 12.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A519MI72|A0A519MI72_9BURK UPF0060 membrane protein EON49_05900 OS=Acidovorax sp. OX=1872122 GN=EON49_05900 PE=3 SV=1
MM1 pKa = 6.73QQLLARR7 pKa = 11.84IGRR10 pKa = 11.84WPGLRR15 pKa = 11.84WIEE18 pKa = 3.83GWVRR22 pKa = 11.84SLPPWAAVALFALPTALLLPVKK44 pKa = 10.37LLALWAMGRR53 pKa = 11.84GHH55 pKa = 6.58VVLGMLVIALAKK67 pKa = 10.12VVGTAVVARR76 pKa = 11.84LFTLTQPALMQLRR89 pKa = 11.84WFAWAYY95 pKa = 5.37THH97 pKa = 7.39WISFKK102 pKa = 10.88HH103 pKa = 5.46RR104 pKa = 11.84VLKK107 pKa = 10.34RR108 pKa = 11.84ARR110 pKa = 11.84ASWAWRR116 pKa = 11.84VARR119 pKa = 11.84VVRR122 pKa = 11.84RR123 pKa = 11.84HH124 pKa = 4.29WVQRR128 pKa = 11.84WRR130 pKa = 11.84RR131 pKa = 11.84RR132 pKa = 3.39

Molecular weight: 15.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5416

0

5416

1423572

21

3428

262.8

28.37

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.44 ± 0.055

0.881 ± 0.014

5.182 ± 0.03

4.845 ± 0.033

3.351 ± 0.025

8.426 ± 0.032

2.374 ± 0.019

4.042 ± 0.026

3.073 ± 0.036

10.641 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.431 ± 0.016

2.535 ± 0.024

5.383 ± 0.031

4.337 ± 0.022

6.65 ± 0.031

5.375 ± 0.029

5.506 ± 0.035

7.851 ± 0.028

1.538 ± 0.016

2.138 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski