Dishui Lake phycodnavirus 3

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; Algavirales; Phycodnaviridae; Prasinovirus; unclassified Prasinovirus

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 203 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6G6XPK1|A0A6G6XPK1_9PHYC Uncharacterized protein OS=Dishui Lake phycodnavirus 3 OX=2704074 PE=4 SV=1
MM1 pKa = 7.23KK2 pKa = 10.04TGFDD6 pKa = 4.18LSDD9 pKa = 4.32SGNDD13 pKa = 3.15MYY15 pKa = 11.72DD16 pKa = 3.03NHH18 pKa = 6.94LKK20 pKa = 10.81ALIDD24 pKa = 3.28IVTPVVEE31 pKa = 4.12KK32 pKa = 10.87AIVLSCEE39 pKa = 3.73YY40 pKa = 11.03AKK42 pKa = 10.98ACGRR46 pKa = 11.84DD47 pKa = 3.51TVISKK52 pKa = 10.43DD53 pKa = 3.24FEE55 pKa = 4.31YY56 pKa = 10.72AAKK59 pKa = 8.63YY60 pKa = 9.98CAMRR64 pKa = 11.84TVGQHH69 pKa = 5.83IGSHH73 pKa = 5.23FPEE76 pKa = 6.18IYY78 pKa = 10.57EE79 pKa = 4.33EE80 pKa = 5.31DD81 pKa = 4.46DD82 pKa = 5.0DD83 pKa = 5.95DD84 pKa = 6.27EE85 pKa = 5.99EE86 pKa = 7.48DD87 pKa = 3.67IDD89 pKa = 4.51DD90 pKa = 5.29LEE92 pKa = 4.59VVDD95 pKa = 5.25DD96 pKa = 4.67DD97 pKa = 4.81SIEE100 pKa = 4.01FVRR103 pKa = 11.84YY104 pKa = 10.34SGDD107 pKa = 3.44DD108 pKa = 3.57PSFLAINEE116 pKa = 4.85AYY118 pKa = 9.95DD119 pKa = 4.06AWDD122 pKa = 2.88AWVPQSPVEE131 pKa = 4.04EE132 pKa = 4.08LLKK135 pKa = 10.99NAINSNEE142 pKa = 4.06HH143 pKa = 6.37CGGGVDD149 pKa = 5.83DD150 pKa = 4.75EE151 pKa = 4.63

Molecular weight: 16.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6G6XPN5|A0A6G6XPN5_9PHYC Uncharacterized protein OS=Dishui Lake phycodnavirus 3 OX=2704074 PE=4 SV=1
MM1 pKa = 7.55DD2 pKa = 4.11TDD4 pKa = 3.45RR5 pKa = 11.84TKK7 pKa = 11.12ASKK10 pKa = 10.01SVSMGFSTVMCFAKK24 pKa = 10.41EE25 pKa = 3.82RR26 pKa = 11.84FQKK29 pKa = 8.69TRR31 pKa = 11.84RR32 pKa = 11.84RR33 pKa = 11.84NVAIKK38 pKa = 9.88ILRR41 pKa = 11.84RR42 pKa = 11.84NTSASVIMSDD52 pKa = 4.69LFSALAISLNILLCNYY68 pKa = 9.82IFFF71 pKa = 5.45

Molecular weight: 8.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

203

0

203

57732

55

2750

284.4

32.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.553 ± 0.349

1.42 ± 0.138

5.82 ± 0.229

6.142 ± 0.266

4.36 ± 0.146

6.274 ± 0.378

2.044 ± 0.106

6.565 ± 0.172

6.884 ± 0.402

7.772 ± 0.165

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.673 ± 0.153

6.094 ± 0.561

3.979 ± 0.148

3.182 ± 0.098

5.267 ± 0.205

6.253 ± 0.232

6.646 ± 0.29

7.012 ± 0.243

1.008 ± 0.075

4.053 ± 0.205
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski