Salmonella phage SETP13

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; Salmonella virus SETP13

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 69 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|U5N0W5|U5N0W5_9CAUD Putative tail tape measure protein OS=Salmonella phage SETP13 OX=424949 PE=4 SV=1
MM1 pKa = 7.73PMLIVAALVTIAFAIGLILLFIIMDD26 pKa = 3.87ASVFVNVYY34 pKa = 10.43KK35 pKa = 11.15GITGLTAVEE44 pKa = 3.96CRR46 pKa = 11.84ILYY49 pKa = 8.09VGCVAVSAAVLLGEE63 pKa = 5.46DD64 pKa = 4.17LDD66 pKa = 4.27LL67 pKa = 6.22

Molecular weight: 7.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|U5N3W8|U5N3W8_9CAUD Uncharacterized protein OS=Salmonella phage SETP13 OX=424949 PE=4 SV=1
MM1 pKa = 7.09SLAYY5 pKa = 9.92RR6 pKa = 11.84RR7 pKa = 11.84LNAHH11 pKa = 6.64KK12 pKa = 10.18AGVVTSMRR20 pKa = 11.84LFVMWYY26 pKa = 9.17AEE28 pKa = 4.31TVFGRR33 pKa = 11.84RR34 pKa = 11.84FYY36 pKa = 10.78AIHH39 pKa = 5.65SRR41 pKa = 11.84GWRR44 pKa = 11.84WEE46 pKa = 4.07GVGKK50 pKa = 9.11WWVYY54 pKa = 11.38KK55 pKa = 10.65DD56 pKa = 3.68GQDD59 pKa = 3.16

Molecular weight: 7.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

69

0

69

13101

47

852

189.9

21.05

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.9 ± 0.583

1.0 ± 0.127

6.206 ± 0.228

6.786 ± 0.431

3.832 ± 0.138

7.664 ± 0.351

1.672 ± 0.182

4.877 ± 0.203

6.068 ± 0.34

7.717 ± 0.241

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.58 ± 0.171

4.274 ± 0.211

3.855 ± 0.226

3.595 ± 0.254

5.648 ± 0.224

5.755 ± 0.304

6.099 ± 0.306

7.511 ± 0.294

1.443 ± 0.155

3.519 ± 0.184
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski