Capybara microvirus Cap1_SP_159

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W597|A0A4P8W597_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_159 OX=2585395 PE=4 SV=1
MM1 pKa = 7.43KK2 pKa = 9.65PDD4 pKa = 4.23SPDD7 pKa = 3.2STHH10 pKa = 7.1DD11 pKa = 3.03RR12 pKa = 11.84TYY14 pKa = 11.35LVAVRR19 pKa = 11.84DD20 pKa = 3.95KK21 pKa = 10.57STPQCIMFPRR31 pKa = 11.84LLPMGAIRR39 pKa = 11.84QYY41 pKa = 11.19KK42 pKa = 9.08HH43 pKa = 7.22DD44 pKa = 4.05IGNFILKK51 pKa = 10.46SPDD54 pKa = 2.93SAYY57 pKa = 10.74ALYY60 pKa = 9.83PEE62 pKa = 5.54EE63 pKa = 3.9YY64 pKa = 10.23AIVCIEE70 pKa = 4.15IDD72 pKa = 3.35NANDD76 pKa = 3.27FFEE79 pKa = 4.8VCDD82 pKa = 4.52FRR84 pKa = 11.84DD85 pKa = 3.77CKK87 pKa = 10.63FLAEE91 pKa = 3.85EE92 pKa = 4.26AQRR95 pKa = 11.84KK96 pKa = 5.33TSEE99 pKa = 4.1VKK101 pKa = 9.98TDD103 pKa = 3.29EE104 pKa = 4.86DD105 pKa = 4.03NNN107 pKa = 3.94

Molecular weight: 12.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W4F9|A0A4P8W4F9_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_159 OX=2585395 PE=4 SV=1
MM1 pKa = 7.4SWLKK5 pKa = 10.77KK6 pKa = 10.29AFKK9 pKa = 10.12KK10 pKa = 9.91IKK12 pKa = 10.06KK13 pKa = 8.8AVKK16 pKa = 10.32NPTHH20 pKa = 6.62SKK22 pKa = 10.73AFRR25 pKa = 11.84HH26 pKa = 5.37VLNATSGGLAGEE38 pKa = 4.48IAHH41 pKa = 6.76HH42 pKa = 6.15LNKK45 pKa = 9.96ARR47 pKa = 11.84RR48 pKa = 11.84KK49 pKa = 9.34VGLSGKK55 pKa = 8.82SIKK58 pKa = 10.27SALSSRR64 pKa = 11.84ATGASNTALTLSGSSMSRR82 pKa = 11.84QPMGNTGFHH91 pKa = 7.02RR92 pKa = 11.84YY93 pKa = 9.24GMM95 pKa = 4.22

Molecular weight: 10.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1504

95

556

250.7

28.14

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.713 ± 0.888

1.862 ± 0.632

6.25 ± 0.767

5.585 ± 0.703

4.787 ± 0.773

6.25 ± 0.673

2.992 ± 0.335

5.519 ± 0.431

5.718 ± 0.947

8.71 ± 0.724

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.928 ± 0.373

5.319 ± 1.128

5.253 ± 0.713

3.457 ± 0.4

5.452 ± 0.211

8.112 ± 0.57

5.12 ± 0.225

4.987 ± 0.543

1.197 ± 0.262

3.79 ± 0.389
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski