Citrus leprosis virus N

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Dichorhavirus; Citrus leprosis N dichorhavirus

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1W6AWM3|A0A1W6AWM3_9RHAB Phosphoprotein OS=Citrus leprosis virus N OX=1956177 GN=ORF2 PE=4 SV=1
MM1 pKa = 7.55ASSVMIDD8 pKa = 3.58YY9 pKa = 7.67TTVIPAYY16 pKa = 10.04QATPTEE22 pKa = 4.17NQVASSAPTPKK33 pKa = 10.28QYY35 pKa = 10.28TRR37 pKa = 11.84AAAVAVPIVKK47 pKa = 10.0IPPPTDD53 pKa = 3.11NPQDD57 pKa = 3.3LVTRR61 pKa = 11.84FEE63 pKa = 4.53TLMSTASSILTKK75 pKa = 10.82AEE77 pKa = 3.69LAEE80 pKa = 3.83IMGIGFCITPPGMDD94 pKa = 4.09EE95 pKa = 4.0PAMMMVAVGAVTQGLTMGQIPATYY119 pKa = 10.05DD120 pKa = 3.08SRR122 pKa = 11.84AAAANAMINIDD133 pKa = 3.84PDD135 pKa = 3.63EE136 pKa = 5.17EE137 pKa = 4.29EE138 pKa = 5.29DD139 pKa = 5.34KK140 pKa = 11.47SDD142 pKa = 3.79TPKK145 pKa = 10.88KK146 pKa = 9.61PAEE149 pKa = 3.92EE150 pKa = 4.27SAGSKK155 pKa = 9.86AAAITYY161 pKa = 9.66ICLSLLRR168 pKa = 11.84LCVKK172 pKa = 10.35EE173 pKa = 3.65VDD175 pKa = 3.65TFLKK179 pKa = 10.66GVQQLKK185 pKa = 10.23SSYY188 pKa = 8.97HH189 pKa = 7.18ILMGAHH195 pKa = 6.1SEE197 pKa = 4.35YY198 pKa = 8.35MTSFQYY204 pKa = 10.81SRR206 pKa = 11.84GMCSNIASLFNQCEE220 pKa = 4.07DD221 pKa = 3.25LRR223 pKa = 11.84RR224 pKa = 11.84TLAHH228 pKa = 6.4HH229 pKa = 6.55CAIADD234 pKa = 3.76EE235 pKa = 5.13TYY237 pKa = 8.57HH238 pKa = 5.88QARR241 pKa = 11.84NVHH244 pKa = 5.68GPLRR248 pKa = 11.84FLILQHH254 pKa = 6.3MDD256 pKa = 3.23LTGMIPYY263 pKa = 10.65GMYY266 pKa = 9.83IDD268 pKa = 5.41LKK270 pKa = 10.37MGLPLLSPGLLLTWLHH286 pKa = 6.74DD287 pKa = 3.51AHH289 pKa = 6.96VSNVLALISEE299 pKa = 4.54INTKK303 pKa = 10.38YY304 pKa = 9.55DD305 pKa = 3.21TLTSGDD311 pKa = 3.72RR312 pKa = 11.84FWRR315 pKa = 11.84YY316 pKa = 9.71SRR318 pKa = 11.84GIDD321 pKa = 3.15PGFFLPLQQSKK332 pKa = 10.89CYY334 pKa = 10.39ILIARR339 pKa = 11.84MADD342 pKa = 2.76ILVRR346 pKa = 11.84SGIVSVTQYY355 pKa = 11.13SDD357 pKa = 3.18PRR359 pKa = 11.84NARR362 pKa = 11.84CIADD366 pKa = 3.54KK367 pKa = 8.94TTVKK371 pKa = 10.56AQAEE375 pKa = 4.37IFGKK379 pKa = 9.04EE380 pKa = 3.4FWAAYY385 pKa = 9.79SSLSGSSADD394 pKa = 3.56SGPVAKK400 pKa = 9.72TIASGSRR407 pKa = 11.84TGNITVKK414 pKa = 10.64RR415 pKa = 11.84NLHH418 pKa = 6.0PRR420 pKa = 11.84APPPAPVVNMPPPQSSAPGALDD442 pKa = 3.76EE443 pKa = 5.13MVDD446 pKa = 4.42DD447 pKa = 6.78DD448 pKa = 4.56EE449 pKa = 4.95AQQ451 pKa = 3.07

Molecular weight: 48.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1W6AWM7|A0A1W6AWM7_9RHAB Movement protein OS=Citrus leprosis virus N OX=1956177 GN=ORF3 PE=4 SV=1
MM1 pKa = 7.29SASSSSTLSEE11 pKa = 4.13EE12 pKa = 4.27CTVMSVRR19 pKa = 11.84SRR21 pKa = 11.84ITITSTEE28 pKa = 4.29KK29 pKa = 10.31IVPGPDD35 pKa = 2.48ITAKK39 pKa = 10.3IIQSLSLVNSKK50 pKa = 10.74AKK52 pKa = 10.77APDD55 pKa = 3.96GEE57 pKa = 4.63DD58 pKa = 3.46VQGDD62 pKa = 3.67WAQMLEE68 pKa = 4.37EE69 pKa = 4.19VAKK72 pKa = 10.64LSKK75 pKa = 10.05PQISGPFVDD84 pKa = 5.42KK85 pKa = 10.97DD86 pKa = 3.61LEE88 pKa = 4.38RR89 pKa = 11.84GNIYY93 pKa = 9.92SLNMIIGGILDD104 pKa = 3.95SQSGRR109 pKa = 11.84AGKK112 pKa = 10.75VMTLRR117 pKa = 11.84TGGLYY122 pKa = 7.68DD123 pKa = 3.55TPNYY127 pKa = 9.57HH128 pKa = 6.59INGRR132 pKa = 11.84SLAPKK137 pKa = 9.49INKK140 pKa = 8.88DD141 pKa = 3.09ASLEE145 pKa = 4.0ITATVATVKK154 pKa = 10.6RR155 pKa = 11.84PVPLCKK161 pKa = 10.01QKK163 pKa = 10.44IQDD166 pKa = 4.03YY167 pKa = 10.42IILLKK172 pKa = 10.83VVINPPTTGRR182 pKa = 11.84GRR184 pKa = 11.84SGG186 pKa = 2.94

Molecular weight: 19.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

3606

186

1879

601.0

67.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.491 ± 0.994

1.886 ± 0.149

5.824 ± 0.214

5.241 ± 0.396

2.884 ± 0.32

6.378 ± 0.604

2.94 ± 0.34

7.404 ± 0.386

5.574 ± 0.511

8.735 ± 0.507

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.966 ± 0.149

3.966 ± 0.308

4.853 ± 0.575

2.856 ± 0.431

5.186 ± 0.719

8.93 ± 0.449

6.378 ± 0.56

6.517 ± 0.358

1.581 ± 0.206

3.411 ± 0.42
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski