Kordiimonadales bacterium JCM 17845

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Iodidimonadales; Iodidimonadaceae; Iodidimonas

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2941 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5A7N134|A0A5A7N134_9PROT Tryptophan synthase beta chain OS=Kordiimonadales bacterium JCM 17845 OX=1236967 GN=trpB PE=3 SV=1
MM1 pKa = 7.94GYY3 pKa = 10.51GLPAAIGAQLAFPDD17 pKa = 4.2ALVIDD22 pKa = 4.3IAGEE26 pKa = 3.74ASIQMNIQEE35 pKa = 4.91LATATQYY42 pKa = 11.26RR43 pKa = 11.84LPVKK47 pKa = 10.37IFILNNEE54 pKa = 4.03YY55 pKa = 10.22MGMVRR60 pKa = 11.84QWQEE64 pKa = 3.23LTYY67 pKa = 9.9EE68 pKa = 4.1SRR70 pKa = 11.84YY71 pKa = 9.7SEE73 pKa = 4.71SYY75 pKa = 10.83SDD77 pKa = 3.82SLPDD81 pKa = 3.79FVKK84 pKa = 10.66LAEE87 pKa = 4.51AYY89 pKa = 9.23GWTGLRR95 pKa = 11.84ITDD98 pKa = 3.98ASRR101 pKa = 11.84LDD103 pKa = 5.06DD104 pKa = 4.6MIQTMIEE111 pKa = 4.11TPGPVLVDD119 pKa = 3.35CQVAQLEE126 pKa = 4.63NCFPMVPSGAAHH138 pKa = 6.56NEE140 pKa = 4.22MILGPEE146 pKa = 5.0DD147 pKa = 3.01ISAPLSSDD155 pKa = 2.83AQALVV160 pKa = 3.14

Molecular weight: 17.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5A7MYW0|A0A5A7MYW0_9PROT Molybdopterin molybdenumtransferase OS=Kordiimonadales bacterium JCM 17845 OX=1236967 GN=JCM17845_18050 PE=3 SV=1
MM1 pKa = 7.35KK2 pKa = 9.43RR3 pKa = 11.84TYY5 pKa = 10.09QPSKK9 pKa = 8.8IVRR12 pKa = 11.84KK13 pKa = 9.24RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.55GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84NVLRR32 pKa = 11.84ARR34 pKa = 11.84RR35 pKa = 11.84SKK37 pKa = 10.39GRR39 pKa = 11.84KK40 pKa = 8.77RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2941

0

2941

832409

40

1629

283.0

30.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.365 ± 0.057

0.859 ± 0.015

6.419 ± 0.035

5.631 ± 0.042

3.886 ± 0.037

8.176 ± 0.042

2.236 ± 0.024

5.428 ± 0.031

3.845 ± 0.037

10.341 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.745 ± 0.021

2.807 ± 0.032

4.913 ± 0.036

3.471 ± 0.028

6.691 ± 0.037

5.831 ± 0.033

5.034 ± 0.031

6.808 ± 0.04

1.271 ± 0.016

2.24 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski