Wenling hoplichthys paramyxovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Hoplichthysvirus; Hoplichthys hoplichthysvirus

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P1GNJ8|A0A2P1GNJ8_9MONO Fusion glycoprotein F0 OS=Wenling hoplichthys paramyxovirus OX=2116453 PE=3 SV=1
MM1 pKa = 7.43TMGTLVFMLLVLLAGEE17 pKa = 4.58CKK19 pKa = 10.66GGDD22 pKa = 3.91EE23 pKa = 4.51SCLYY27 pKa = 10.19PPALIQQEE35 pKa = 4.07GKK37 pKa = 9.88IFYY40 pKa = 10.21NGVPGTTRR48 pKa = 11.84LVSTDD53 pKa = 3.51RR54 pKa = 11.84VICPSTGCNIISDD67 pKa = 4.05GRR69 pKa = 11.84LSASADD75 pKa = 3.4AYY77 pKa = 10.96GSMDD81 pKa = 3.11MHH83 pKa = 6.83KK84 pKa = 10.24RR85 pKa = 11.84DD86 pKa = 3.36YY87 pKa = 11.19EE88 pKa = 4.22FYY90 pKa = 10.2KK91 pKa = 10.93DD92 pKa = 4.18KK93 pKa = 10.71IVSRR97 pKa = 11.84AGGALVANILRR108 pKa = 11.84TRR110 pKa = 11.84ANTALGFYY118 pKa = 9.23EE119 pKa = 5.71SCAEE123 pKa = 3.68WKK125 pKa = 10.08IFYY128 pKa = 9.85EE129 pKa = 4.57GVVFSPYY136 pKa = 9.12MRR138 pKa = 11.84QACTGTNGEE147 pKa = 4.09WSRR150 pKa = 11.84MKK152 pKa = 10.39EE153 pKa = 3.58QFYY156 pKa = 10.12TKK158 pKa = 9.62FYY160 pKa = 11.06EE161 pKa = 3.95MATRR165 pKa = 11.84FQCFKK170 pKa = 10.36FVRR173 pKa = 11.84VPYY176 pKa = 9.97IRR178 pKa = 11.84PAEE181 pKa = 4.22STQEE185 pKa = 3.95VAPGCGAGGTINGVEE200 pKa = 4.64YY201 pKa = 9.42ITDD204 pKa = 3.65PRR206 pKa = 11.84NGTIITSVVTDD217 pKa = 3.67LKK219 pKa = 10.46ITGEE223 pKa = 4.18YY224 pKa = 10.75LMPFCYY230 pKa = 9.33FVYY233 pKa = 10.23RR234 pKa = 11.84SRR236 pKa = 11.84DD237 pKa = 2.4IWLAEE242 pKa = 3.52NRR244 pKa = 11.84GYY246 pKa = 11.21DD247 pKa = 3.26SDD249 pKa = 4.66PFLKK253 pKa = 10.58VYY255 pKa = 10.72NEE257 pKa = 3.92QGEE260 pKa = 4.63TLFDD264 pKa = 3.75WNQLTDD270 pKa = 4.05GYY272 pKa = 11.1GEE274 pKa = 4.07PKK276 pKa = 9.61AEE278 pKa = 4.44KK279 pKa = 9.49MIKK282 pKa = 9.81CSFIIVEE289 pKa = 4.4KK290 pKa = 9.62TSKK293 pKa = 8.97ITIQSWSASQFITRR307 pKa = 11.84AAYY310 pKa = 9.78YY311 pKa = 10.2FNEE314 pKa = 4.76TIPRR318 pKa = 11.84RR319 pKa = 11.84PIQVIEE325 pKa = 4.48SKK327 pKa = 9.51WAQSRR332 pKa = 11.84MSDD335 pKa = 4.27PITQEE340 pKa = 3.86SACRR344 pKa = 11.84RR345 pKa = 11.84LGDD348 pKa = 3.28YY349 pKa = 10.72CIYY352 pKa = 10.55FRR354 pKa = 11.84IGTYY358 pKa = 10.44LGIFDD363 pKa = 5.86DD364 pKa = 4.74EE365 pKa = 5.43LGDD368 pKa = 3.75LQVRR372 pKa = 11.84DD373 pKa = 3.81ILSGQKK379 pKa = 10.41GGGPNFCGGRR389 pKa = 11.84SYY391 pKa = 11.23PGGCPASCNPSPFCTDD407 pKa = 4.03YY408 pKa = 11.37ISMGGATAHH417 pKa = 6.2MASPYY422 pKa = 10.05SSYY425 pKa = 11.2RR426 pKa = 11.84SFGSLYY432 pKa = 10.41EE433 pKa = 4.12KK434 pKa = 8.64WTLTYY439 pKa = 10.24PGGEE443 pKa = 4.21SVSTLLHH450 pKa = 5.46QLSLSMASEE459 pKa = 4.31WNTGSITPEE468 pKa = 4.09GEE470 pKa = 3.93PTLSLLGMDD479 pKa = 4.08SEE481 pKa = 4.37ISNFEE486 pKa = 3.93TLGYY490 pKa = 9.18TKK492 pKa = 10.65DD493 pKa = 3.51PEE495 pKa = 4.29TTRR498 pKa = 11.84WCVTLSCEE506 pKa = 3.97NCTNLFDD513 pKa = 4.04TRR515 pKa = 11.84TGRR518 pKa = 11.84PRR520 pKa = 11.84IAPFVASRR528 pKa = 11.84IKK530 pKa = 11.03AEE532 pKa = 3.95GLAEE536 pKa = 4.07IEE538 pKa = 5.0MRR540 pKa = 11.84DD541 pKa = 3.49YY542 pKa = 11.14WNDD545 pKa = 2.71VSLIIALCLLLALIIWLIVTSVLLTDD571 pKa = 3.29VRR573 pKa = 11.84RR574 pKa = 11.84TKK576 pKa = 10.29KK577 pKa = 10.03HH578 pKa = 5.51PRR580 pKa = 11.84SSIDD584 pKa = 3.18PSMEE588 pKa = 3.99GYY590 pKa = 10.3VADD593 pKa = 4.49LL594 pKa = 3.98

Molecular weight: 66.43 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P1GN21|A0A2P1GN21_9MONO Nucleocapsid OS=Wenling hoplichthys paramyxovirus OX=2116453 PE=3 SV=1
MM1 pKa = 7.72AARR4 pKa = 11.84EE5 pKa = 4.17LSRR8 pKa = 11.84AAYY11 pKa = 10.02DD12 pKa = 3.36HH13 pKa = 6.02EE14 pKa = 4.64TGIKK18 pKa = 10.41GPTDD22 pKa = 3.16GTKK25 pKa = 10.32CYY27 pKa = 7.48TTYY30 pKa = 11.06NPWGVGYY37 pKa = 7.67DD38 pKa = 3.4TSQISVFAIGDD49 pKa = 3.45IGKK52 pKa = 10.11DD53 pKa = 3.18KK54 pKa = 10.64ILKK57 pKa = 9.41NLRR60 pKa = 11.84INLGLLTEE68 pKa = 4.47GMTRR72 pKa = 11.84EE73 pKa = 3.9QAADD77 pKa = 4.95LITGTSFSAVKK88 pKa = 10.7VMGVNEE94 pKa = 4.79TIRR97 pKa = 11.84IKK99 pKa = 10.78PNSNMEE105 pKa = 4.39ALRR108 pKa = 11.84KK109 pKa = 8.51ITGLKK114 pKa = 9.72MGVQTALGPVCCPKK128 pKa = 10.76AYY130 pKa = 10.11VFPVGKK136 pKa = 9.9QLDD139 pKa = 3.61VRR141 pKa = 11.84FVHH144 pKa = 7.01VIFTVLPYY152 pKa = 10.56KK153 pKa = 10.8AGTHH157 pKa = 5.75KK158 pKa = 10.94LGGGILNLQKK168 pKa = 9.84TKK170 pKa = 10.4IVGGISVNVQTTGKK184 pKa = 8.52MGKK187 pKa = 8.82IDD189 pKa = 4.6LPLTIPFMEE198 pKa = 4.32WKK200 pKa = 10.21KK201 pKa = 8.74STEE204 pKa = 4.2GVFEE208 pKa = 4.39LMGMVMGASLKK219 pKa = 10.16VALGGVNGLSIHH231 pKa = 5.27VTAIGQIHH239 pKa = 7.44KK240 pKa = 9.81DD241 pKa = 3.48LKK243 pKa = 8.61GTGMNKK249 pKa = 9.84NMMLCPVFMYY259 pKa = 10.53PDD261 pKa = 3.31IVFSNCLKK269 pKa = 8.61MWKK272 pKa = 8.07VTSAKK277 pKa = 10.26LILQIQPRR285 pKa = 11.84VFRR288 pKa = 11.84PIEE291 pKa = 4.05EE292 pKa = 4.37PLVSEE297 pKa = 5.14RR298 pKa = 11.84DD299 pKa = 3.75LLTKK303 pKa = 10.26ALKK306 pKa = 10.74SGGEE310 pKa = 4.06EE311 pKa = 3.72EE312 pKa = 4.87DD313 pKa = 3.5

Molecular weight: 34.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

4722

140

2055

524.7

58.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.612 ± 0.474

2.308 ± 0.333

5.04 ± 0.22

7.264 ± 0.622

3.346 ± 0.293

7.116 ± 0.46

1.588 ± 0.274

7.793 ± 0.444

6.777 ± 0.779

9.022 ± 0.464

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.283 ± 0.277

4.299 ± 0.401

3.685 ± 0.252

2.944 ± 0.239

5.548 ± 0.446

8.492 ± 0.563

6.501 ± 0.428

5.294 ± 0.437

1.207 ± 0.203

2.88 ± 0.42
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski