Shrimp hemocyte iridescent virus

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; Pimascovirales; Iridoviridae; Betairidovirinae; Decapodiridovirus; Decapod iridescent virus 1

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 170 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A291B0Y7|A0A291B0Y7_9VIRU Uncharacterized protein OS=Shrimp hemocyte iridescent virus OX=2039780 GN=147R PE=4 SV=1
MM1 pKa = 7.64FNNCVLKK8 pKa = 10.78AVFSDD13 pKa = 3.52DD14 pKa = 3.94TIEE17 pKa = 4.16KK18 pKa = 10.9LEE20 pKa = 4.18MLDD23 pKa = 2.86ITLPTKK29 pKa = 10.84LNFVGGEE36 pKa = 4.12YY37 pKa = 10.96YY38 pKa = 10.67CISRR42 pKa = 11.84NNIISSTAEE51 pKa = 3.87LQLTTSKK58 pKa = 10.18IQYY61 pKa = 8.99AKK63 pKa = 10.27IVIFSCMFGIGKK75 pKa = 9.19EE76 pKa = 4.21CVIEE80 pKa = 4.62DD81 pKa = 4.68DD82 pKa = 4.01GTVIPFNSQPTQVFQIDD99 pKa = 4.34DD100 pKa = 3.8IFQEE104 pKa = 4.74EE105 pKa = 4.73YY106 pKa = 10.6LLTMSRR112 pKa = 11.84SHH114 pKa = 6.61MDD116 pKa = 3.67SIVSDD121 pKa = 3.85YY122 pKa = 11.31QLLLDD127 pKa = 4.21YY128 pKa = 11.38LCDD131 pKa = 3.63NNMMDD136 pKa = 4.51EE137 pKa = 4.34FTKK140 pKa = 10.78SEE142 pKa = 5.16LIFKK146 pKa = 10.05LQTLANQCIDD156 pKa = 3.62FEE158 pKa = 4.54NPQEE162 pKa = 4.28PEE164 pKa = 3.58EE165 pKa = 4.98HH166 pKa = 6.69EE167 pKa = 4.2FQEE170 pKa = 5.01DD171 pKa = 3.08SGYY174 pKa = 11.11EE175 pKa = 4.01DD176 pKa = 3.73NSHH179 pKa = 6.22NEE181 pKa = 3.42WWW183 pKa = 3.44

Molecular weight: 21.27 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A291B0N4|A0A291B0N4_9VIRU Uncharacterized protein OS=Shrimp hemocyte iridescent virus OX=2039780 GN=46R PE=4 SV=1
MM1 pKa = 7.81GPFLPTNEE9 pKa = 5.23IIPGMSPSRR18 pKa = 11.84VRR20 pKa = 11.84RR21 pKa = 11.84IQQKK25 pKa = 7.71YY26 pKa = 4.34TTPKK30 pKa = 10.35RR31 pKa = 11.84PSTYY35 pKa = 8.68YY36 pKa = 10.38DD37 pKa = 2.98ARR39 pKa = 11.84SRR41 pKa = 11.84PFKK44 pKa = 9.73PANDD48 pKa = 4.59IIPGMSAAEE57 pKa = 3.83VRR59 pKa = 11.84RR60 pKa = 11.84IKK62 pKa = 10.55KK63 pKa = 10.13KK64 pKa = 8.76YY65 pKa = 8.25AQPAEE70 pKa = 3.83EE71 pKa = 4.35SVYY74 pKa = 10.75FDD76 pKa = 5.62ALDD79 pKa = 3.92LDD81 pKa = 4.23

Molecular weight: 9.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

170

0

170

49110

21

1167

288.9

33.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.612 ± 0.138

1.69 ± 0.092

6.241 ± 0.137

8.414 ± 0.204

5.343 ± 0.139

4.292 ± 0.145

1.765 ± 0.072

8.045 ± 0.126

9.636 ± 0.21

7.807 ± 0.142

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.792 ± 0.087

6.728 ± 0.137

3.944 ± 0.171

3.437 ± 0.137

4.311 ± 0.175

6.373 ± 0.168

5.054 ± 0.201

5.661 ± 0.114

0.829 ± 0.05

4.026 ± 0.127
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski