Phytophthora infestans RNA virus 1

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified ssRNA viruses; unclassified ssRNA positive-strand viruses

Average proteome isoelectric point is 6.84

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C7SHT6|C7SHT6_9VIRU Uncharacterized protein ORF2A OS=Phytophthora infestans RNA virus 1 OX=640897 GN=ORF2A PE=4 SV=1
MM1 pKa = 7.22QINVGGRR8 pKa = 11.84EE9 pKa = 3.7LCAIFVGLICWMFICEE25 pKa = 4.76FIVNEE30 pKa = 3.97YY31 pKa = 9.04EE32 pKa = 3.89QFYY35 pKa = 8.08GTEE38 pKa = 4.32YY39 pKa = 10.35TVEE42 pKa = 4.12TSPMCALFEE51 pKa = 4.47GCSLNVEE58 pKa = 4.26SFLKK62 pKa = 11.06NEE64 pKa = 4.26DD65 pKa = 3.15VRR67 pKa = 11.84SIMITALFVGKK78 pKa = 8.9MLEE81 pKa = 4.1MLDD84 pKa = 3.21ITVKK88 pKa = 10.86FEE90 pKa = 3.84FSSAEE95 pKa = 3.76EE96 pKa = 4.54GEE98 pKa = 4.87SVFADD103 pKa = 4.54FNRR106 pKa = 11.84DD107 pKa = 3.05LRR109 pKa = 11.84DD110 pKa = 3.17VRR112 pKa = 11.84RR113 pKa = 11.84SVEE116 pKa = 4.06LKK118 pKa = 9.83ASSMKK123 pKa = 10.49KK124 pKa = 9.79IIADD128 pKa = 3.66FRR130 pKa = 11.84TKK132 pKa = 10.01IRR134 pKa = 11.84SIVYY138 pKa = 10.01LGVSNIDD145 pKa = 3.31IPNVHH150 pKa = 6.84AMRR153 pKa = 11.84YY154 pKa = 9.06PIDD157 pKa = 3.63FFMSRR162 pKa = 11.84LYY164 pKa = 10.87RR165 pKa = 11.84MKK167 pKa = 10.19FLKK170 pKa = 10.26EE171 pKa = 3.92YY172 pKa = 10.24EE173 pKa = 4.16EE174 pKa = 4.12SRR176 pKa = 11.84EE177 pKa = 3.79KK178 pKa = 10.56YY179 pKa = 9.96RR180 pKa = 11.84RR181 pKa = 11.84VNPTLAMKK189 pKa = 10.21LAQLLRR195 pKa = 11.84YY196 pKa = 10.05DD197 pKa = 4.02NEE199 pKa = 4.29FLLEE203 pKa = 4.28SNVAEE208 pKa = 4.05ALKK211 pKa = 10.71EE212 pKa = 4.16SVEE215 pKa = 4.22EE216 pKa = 3.87VLEE219 pKa = 4.3EE220 pKa = 4.3VFSNPSFEE228 pKa = 4.16EE229 pKa = 3.86VKK231 pKa = 10.48IEE233 pKa = 4.38LNGRR237 pKa = 11.84LNSGMAMFDD246 pKa = 4.23DD247 pKa = 4.21INVNGSSAAGYY258 pKa = 7.42PYY260 pKa = 9.8PAGVKK265 pKa = 9.99RR266 pKa = 11.84RR267 pKa = 11.84DD268 pKa = 3.48VLEE271 pKa = 3.99EE272 pKa = 4.1AKK274 pKa = 10.8ASAYY278 pKa = 10.4DD279 pKa = 4.13LYY281 pKa = 11.42NDD283 pKa = 3.39SDD285 pKa = 4.02LFEE288 pKa = 7.53GYY290 pKa = 9.63MSDD293 pKa = 3.48HH294 pKa = 6.57RR295 pKa = 11.84WYY297 pKa = 7.24TTGRR301 pKa = 11.84AKK303 pKa = 10.13LVKK306 pKa = 9.42MGKK309 pKa = 8.53PDD311 pKa = 3.46KK312 pKa = 10.87ARR314 pKa = 11.84LVLYY318 pKa = 10.82SGFSYY323 pKa = 11.15SLLGFVYY330 pKa = 10.05SQVWTGFMNRR340 pKa = 11.84QCRR343 pKa = 11.84GWSAVGMSWMNGGAAKK359 pKa = 10.17VASFFEE365 pKa = 4.65DD366 pKa = 3.62CFGIAVSGFEE376 pKa = 4.46YY377 pKa = 8.23MTLDD381 pKa = 3.29VAEE384 pKa = 4.58WDD386 pKa = 3.61SSVCRR391 pKa = 11.84EE392 pKa = 4.46LLHH395 pKa = 5.85ACKK398 pKa = 9.83RR399 pKa = 11.84FHH401 pKa = 6.16MRR403 pKa = 11.84VLEE406 pKa = 4.14RR407 pKa = 11.84TLSPEE412 pKa = 3.36NARR415 pKa = 11.84YY416 pKa = 9.53KK417 pKa = 10.56EE418 pKa = 4.14YY419 pKa = 10.52FGRR422 pKa = 11.84IYY424 pKa = 11.05DD425 pKa = 3.74EE426 pKa = 4.38MIEE429 pKa = 4.25AKK431 pKa = 10.25VVLPGGHH438 pKa = 5.95SFRR441 pKa = 11.84LHH443 pKa = 7.09HH444 pKa = 6.12GMKK447 pKa = 10.21SGWIMTANDD456 pKa = 3.55NTLMHH461 pKa = 6.56EE462 pKa = 4.36FVVRR466 pKa = 11.84TLQKK470 pKa = 10.04IGQIPDD476 pKa = 3.52MKK478 pKa = 10.2RR479 pKa = 11.84QLYY482 pKa = 10.78GDD484 pKa = 4.78DD485 pKa = 3.51NLSRR489 pKa = 11.84KK490 pKa = 8.97PIGMSKK496 pKa = 9.94QLLVDD501 pKa = 4.25GYY503 pKa = 11.63GMFGFRR509 pKa = 11.84LSHH512 pKa = 5.33IHH514 pKa = 4.54VSRR517 pKa = 11.84RR518 pKa = 11.84LSEE521 pKa = 3.97VDD523 pKa = 4.03FLSKK527 pKa = 10.31FIIFKK532 pKa = 10.69DD533 pKa = 3.4GFYY536 pKa = 10.64FPWRR540 pKa = 11.84EE541 pKa = 3.7QTEE544 pKa = 4.17THH546 pKa = 6.22ARR548 pKa = 11.84LLMPEE553 pKa = 4.28EE554 pKa = 4.16FDD556 pKa = 3.47PNYY559 pKa = 10.54RR560 pKa = 11.84IVPDD564 pKa = 3.39SRR566 pKa = 11.84VAAEE570 pKa = 4.32HH571 pKa = 6.64LLGHH575 pKa = 7.32LLDD578 pKa = 4.58NPFNANVRR586 pKa = 11.84HH587 pKa = 5.16VCFTLLEE594 pKa = 4.43YY595 pKa = 10.39IKK597 pKa = 10.82SNYY600 pKa = 8.21GVRR603 pKa = 11.84TINVEE608 pKa = 3.84EE609 pKa = 4.71FINTRR614 pKa = 11.84WSFMLRR620 pKa = 11.84DD621 pKa = 3.82IKK623 pKa = 10.62RR624 pKa = 11.84LCGEE628 pKa = 4.02IPTVPSVEE636 pKa = 5.06FIQEE640 pKa = 4.14LYY642 pKa = 11.08GVFSEE647 pKa = 4.28PVSFNWAGVGEE658 pKa = 4.44YY659 pKa = 10.32ARR661 pKa = 11.84KK662 pKa = 9.58LPKK665 pKa = 10.15FSFISKK671 pKa = 10.12APSAEE676 pKa = 3.85PFFRR680 pKa = 11.84SQKK683 pKa = 10.52AAFEE687 pKa = 4.43LSVSEE692 pKa = 4.3KK693 pKa = 10.09FGHH696 pKa = 6.58RR697 pKa = 11.84KK698 pKa = 7.53TSALNRR704 pKa = 11.84ACGYY708 pKa = 10.91KK709 pKa = 10.31KK710 pKa = 9.95MPLHH714 pKa = 6.87IFGQAGGKK722 pKa = 9.62LIEE725 pKa = 5.17IINTCGLKK733 pKa = 10.53CEE735 pKa = 4.33SVLDD739 pKa = 4.51LGTHH743 pKa = 7.07PGAAMATLQSMHH755 pKa = 6.29KK756 pKa = 9.55VKK758 pKa = 10.77SATCVSLFPEE768 pKa = 4.06IDD770 pKa = 3.31KK771 pKa = 11.52SKK773 pKa = 10.43GFCPRR778 pKa = 11.84VLRR781 pKa = 11.84GKK783 pKa = 10.12DD784 pKa = 3.37FEE786 pKa = 4.22FFEE789 pKa = 4.44MSAEE793 pKa = 3.97KK794 pKa = 10.33FKK796 pKa = 9.59PTKK799 pKa = 10.34HH800 pKa = 6.68YY801 pKa = 11.32DD802 pKa = 3.0MCFDD806 pKa = 5.88DD807 pKa = 5.78IYY809 pKa = 11.49DD810 pKa = 3.62FEE812 pKa = 4.24EE813 pKa = 4.41ADD815 pKa = 3.42RR816 pKa = 11.84FKK818 pKa = 10.8RR819 pKa = 11.84AEE821 pKa = 3.77QMFGHH826 pKa = 6.62VDD828 pKa = 2.98RR829 pKa = 11.84HH830 pKa = 5.06FAGALTRR837 pKa = 11.84AEE839 pKa = 4.23KK840 pKa = 10.41FKK842 pKa = 10.2PFCGSYY848 pKa = 9.33VMKK851 pKa = 10.77VRR853 pKa = 11.84GFTPLVLKK861 pKa = 10.54GLYY864 pKa = 9.79DD865 pKa = 4.3LYY867 pKa = 11.55RR868 pKa = 11.84MWGYY872 pKa = 11.38LDD874 pKa = 3.16IRR876 pKa = 11.84KK877 pKa = 7.53TFYY880 pKa = 11.02SNPWNPEE887 pKa = 3.7FYY889 pKa = 9.96VVLVKK894 pKa = 10.73RR895 pKa = 11.84HH896 pKa = 5.14DD897 pKa = 3.48QYY899 pKa = 11.8VRR901 pKa = 11.84RR902 pKa = 11.84STFNGAVNAYY912 pKa = 10.1LNGIAPRR919 pKa = 11.84LSFFVNARR927 pKa = 11.84AFNYY931 pKa = 10.54DD932 pKa = 3.04RR933 pKa = 11.84MSLGRR938 pKa = 11.84EE939 pKa = 3.91TLNNPLRR946 pKa = 11.84DD947 pKa = 3.84DD948 pKa = 3.75EE949 pKa = 4.64TVQRR953 pKa = 11.84AFDD956 pKa = 3.97AYY958 pKa = 10.82AEE960 pKa = 4.23TLRR963 pKa = 11.84AQSFNDD969 pKa = 3.85DD970 pKa = 3.8YY971 pKa = 10.29PTEE974 pKa = 4.14VMFF977 pKa = 5.93

Molecular weight: 112.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C7SHT7|C7SHT7_9VIRU Uncharacterized protein ORF3A OS=Phytophthora infestans RNA virus 1 OX=640897 GN=ORF3A PE=4 SV=1
MM1 pKa = 7.59VSEE4 pKa = 4.59VVLVDD9 pKa = 3.55YY10 pKa = 11.24SRR12 pKa = 11.84DD13 pKa = 3.16RR14 pKa = 11.84HH15 pKa = 5.28AVTRR19 pKa = 11.84AAQWVFSLPARR30 pKa = 11.84LDD32 pKa = 4.09GVCPWVRR39 pKa = 11.84EE40 pKa = 4.24EE41 pKa = 4.33EE42 pKa = 4.26CSLLCQVICFFRR54 pKa = 11.84WLAEE58 pKa = 3.7WKK60 pKa = 10.15RR61 pKa = 11.84WVACLLPSNEE71 pKa = 3.73VRR73 pKa = 11.84GMRR76 pKa = 11.84TEE78 pKa = 3.86IGVQEE83 pKa = 4.21AQLGVNSPINRR94 pKa = 11.84SWMEE98 pKa = 3.82LRR100 pKa = 11.84SLAVFVSVIVCGVILSVIGFLRR122 pKa = 11.84HH123 pKa = 5.31RR124 pKa = 11.84RR125 pKa = 11.84ALRR128 pKa = 11.84STRR131 pKa = 11.84LLTVMGLAQLLIVTIAGMTVTLTDD155 pKa = 3.93FLCVISLMEE164 pKa = 4.24LVTLEE169 pKa = 4.08MAVLLEE175 pKa = 4.1SFLEE179 pKa = 4.29FFEE182 pKa = 4.02MRR184 pKa = 11.84RR185 pKa = 11.84NRR187 pKa = 11.84LVPVSISS194 pKa = 2.98

Molecular weight: 22.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

2018

194

977

672.7

75.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.938 ± 0.418

2.23 ± 0.316

4.559 ± 0.519

6.541 ± 0.856

7.433 ± 0.522

7.83 ± 1.459

1.685 ± 0.379

5.104 ± 0.494

4.609 ± 0.971

9.713 ± 1.079

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.072 ± 0.744

4.014 ± 0.37

2.924 ± 0.449

1.685 ± 0.236

6.739 ± 0.666

7.136 ± 0.14

3.865 ± 0.208

8.87 ± 1.391

1.437 ± 0.31

3.617 ± 0.717
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski