Sanxia tombus-like virus 7

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 8.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KGC2|A0A1L3KGC2_9VIRU Uncharacterized protein OS=Sanxia tombus-like virus 7 OX=1923391 PE=4 SV=1
MM1 pKa = 7.35TARR4 pKa = 11.84CVLAMPRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84GTATNGAGYY22 pKa = 10.78APVSLGTGVRR32 pKa = 11.84ANRR35 pKa = 11.84RR36 pKa = 11.84TPPMQLEE43 pKa = 4.23GTDD46 pKa = 3.62RR47 pKa = 11.84IGVINWDD54 pKa = 3.47GALDD58 pKa = 3.78TGHH61 pKa = 6.92VLFDD65 pKa = 4.23LLVEE69 pKa = 4.2PGIFKK74 pKa = 10.6SLRR77 pKa = 11.84DD78 pKa = 3.52VAKK81 pKa = 10.41ARR83 pKa = 11.84QYY85 pKa = 9.87IQWHH89 pKa = 5.12ALEE92 pKa = 5.26FKK94 pKa = 10.25FSCGTNTAKK103 pKa = 10.76DD104 pKa = 3.84GSYY107 pKa = 10.38VAAFIADD114 pKa = 4.17PDD116 pKa = 4.58DD117 pKa = 5.0KK118 pKa = 11.76NPDD121 pKa = 3.76DD122 pKa = 3.69PTLAVEE128 pKa = 4.81EE129 pKa = 4.44VAGAPGMVQDD139 pKa = 4.69SIWRR143 pKa = 11.84TRR145 pKa = 11.84TVSVGRR151 pKa = 11.84GRR153 pKa = 11.84GNSTQNAIVDD163 pKa = 3.73PTKK166 pKa = 10.36YY167 pKa = 10.55GHH169 pKa = 5.44YY170 pKa = 8.98TSTAGEE176 pKa = 3.97PRR178 pKa = 11.84FYY180 pKa = 11.2SPGSIRR186 pKa = 11.84ALVDD190 pKa = 3.12GRR192 pKa = 11.84VGQAGTMVLYY202 pKa = 8.63CTYY205 pKa = 10.65RR206 pKa = 11.84CTLHH210 pKa = 5.8VQARR214 pKa = 11.84QDD216 pKa = 3.75DD217 pKa = 4.42AQLAPAPVIRR227 pKa = 11.84NVFPWVWPDD236 pKa = 3.26DD237 pKa = 3.53TDD239 pKa = 4.54YY240 pKa = 11.61AITDD244 pKa = 4.15PGPNGVVIRR253 pKa = 11.84WDD255 pKa = 3.46DD256 pKa = 3.46SFPEE260 pKa = 4.31YY261 pKa = 10.42EE262 pKa = 4.82RR263 pKa = 11.84PTTDD267 pKa = 2.37TVFQVPVPVVCSAKK281 pKa = 9.18GTNAGGRR288 pKa = 11.84VICPYY293 pKa = 10.37ILYY296 pKa = 10.07QPSSDD301 pKa = 3.51QFYY304 pKa = 8.11MTDD307 pKa = 4.03DD308 pKa = 3.94LDD310 pKa = 4.14GAAVLQATSPSAASVFQIMPAGMTFTVVYY339 pKa = 9.9TEE341 pKa = 4.57GEE343 pKa = 4.16VTRR346 pKa = 11.84GVRR349 pKa = 11.84EE350 pKa = 3.99LPGGGLTNRR359 pKa = 11.84PPAPRR364 pKa = 11.84GIRR367 pKa = 11.84RR368 pKa = 11.84KK369 pKa = 10.24AYY371 pKa = 9.79

Molecular weight: 40.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KGH8|A0A1L3KGH8_9VIRU Uncharacterized protein OS=Sanxia tombus-like virus 7 OX=1923391 PE=4 SV=1
MM1 pKa = 7.4ATTAQAGGSKK11 pKa = 10.0APKK14 pKa = 9.43GARR17 pKa = 11.84PVQTGNSANGVSGSNASMKK36 pKa = 10.38KK37 pKa = 9.87ILDD40 pKa = 3.99ALPGVSPKK48 pKa = 10.06FVRR51 pKa = 11.84RR52 pKa = 11.84VLRR55 pKa = 11.84GRR57 pKa = 11.84RR58 pKa = 11.84LGITATVLAVYY69 pKa = 10.1NAIQRR74 pKa = 11.84ADD76 pKa = 3.92PEE78 pKa = 4.71DD79 pKa = 5.1PICSSRR85 pKa = 11.84SHH87 pKa = 5.17TNKK90 pKa = 9.39WLNAHH95 pKa = 6.57LNGVASQRR103 pKa = 11.84QAKK106 pKa = 8.3TKK108 pKa = 10.46GRR110 pKa = 11.84TEE112 pKa = 3.91PLIKK116 pKa = 10.16QAADD120 pKa = 3.26EE121 pKa = 4.46LPNNKK126 pKa = 8.32RR127 pKa = 11.84TTGKK131 pKa = 10.6AEE133 pKa = 4.15PKK135 pKa = 9.99QGNAKK140 pKa = 9.69SRR142 pKa = 11.84RR143 pKa = 11.84AEE145 pKa = 3.92RR146 pKa = 11.84RR147 pKa = 11.84AHH149 pKa = 5.84LQPLVRR155 pKa = 11.84GADD158 pKa = 3.3AKK160 pKa = 10.83LAAAKK165 pKa = 9.82HH166 pKa = 5.65RR167 pKa = 11.84SAGGPAMGMSVAWQAEE183 pKa = 4.45ANKK186 pKa = 10.6APLPVTKK193 pKa = 10.24RR194 pKa = 11.84RR195 pKa = 11.84PKK197 pKa = 9.87EE198 pKa = 3.66SRR200 pKa = 11.84IKK202 pKa = 10.42YY203 pKa = 9.73LIRR206 pKa = 11.84SYY208 pKa = 10.73EE209 pKa = 3.88AVIARR214 pKa = 11.84GDD216 pKa = 3.61KK217 pKa = 10.41LHH219 pKa = 5.67QQGKK223 pKa = 9.0IVPEE227 pKa = 4.0NLHH230 pKa = 5.98LQADD234 pKa = 3.84KK235 pKa = 11.48LEE237 pKa = 4.21NLLRR241 pKa = 11.84EE242 pKa = 4.14EE243 pKa = 4.18RR244 pKa = 11.84EE245 pKa = 4.01KK246 pKa = 11.27VRR248 pKa = 11.84GHH250 pKa = 5.95NKK252 pKa = 9.34VNPVRR257 pKa = 11.84LNAKK261 pKa = 9.35KK262 pKa = 10.09RR263 pKa = 11.84RR264 pKa = 11.84SGLRR268 pKa = 11.84RR269 pKa = 11.84QNPEE273 pKa = 3.74LEE275 pKa = 4.16AVRR278 pKa = 11.84SKK280 pKa = 10.74RR281 pKa = 11.84AAAVPMNLNKK291 pKa = 10.52LLGQTQGPLSSVLGNAGLAKK311 pKa = 9.45TVEE314 pKa = 4.61SILPEE319 pKa = 4.26NGLTVTIKK327 pKa = 10.47PSSQRR332 pKa = 11.84EE333 pKa = 3.81RR334 pKa = 11.84KK335 pKa = 8.83NARR338 pKa = 11.84KK339 pKa = 9.17AQVQRR344 pKa = 11.84KK345 pKa = 7.87

Molecular weight: 37.56 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1722

345

527

430.5

47.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.266 ± 0.826

1.626 ± 0.373

4.413 ± 0.891

5.285 ± 0.704

2.381 ± 0.781

7.491 ± 0.871

2.439 ± 0.476

3.194 ± 0.442

5.11 ± 1.072

7.085 ± 1.025

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.207 ± 0.469

4.181 ± 0.485

6.214 ± 0.658

4.297 ± 0.605

9.001 ± 0.339

6.33 ± 0.493

5.691 ± 0.603

7.607 ± 0.605

1.568 ± 0.246

2.613 ± 0.436
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski