Tomato yellow dwarf disease associated satellite DNA beta-[Kochi]

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite

Average proteome isoelectric point is 5.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A7M6K4|A7M6K4_9VIRU BetaC1 protein OS=Tomato yellow dwarf disease associated satellite DNA beta-[Kochi] OX=427315 GN=betaC1 PE=4 SV=1
MM1 pKa = 7.72TITYY5 pKa = 10.78NNGKK9 pKa = 9.48GIKK12 pKa = 10.02FIVDD16 pKa = 3.31VRR18 pKa = 11.84LHH20 pKa = 5.73QLLKK24 pKa = 11.02VIVQVYY30 pKa = 7.05STNKK34 pKa = 9.41PVLTGFKK41 pKa = 10.2CHH43 pKa = 6.53IPYY46 pKa = 9.57TYY48 pKa = 11.1VQMVPPFDD56 pKa = 4.28FNGAEE61 pKa = 3.91EE62 pKa = 5.24LIRR65 pKa = 11.84EE66 pKa = 4.46TLEE69 pKa = 4.77LMYY72 pKa = 10.58EE73 pKa = 4.44DD74 pKa = 5.31SDD76 pKa = 3.44ISNFKK81 pKa = 9.67QEE83 pKa = 4.06EE84 pKa = 4.41MIDD87 pKa = 4.07SIDD90 pKa = 3.54MVMMHH95 pKa = 7.34WLGHH99 pKa = 5.57MGVDD103 pKa = 3.18TVDD106 pKa = 3.61RR107 pKa = 11.84YY108 pKa = 8.71TIRR111 pKa = 11.84CRR113 pKa = 11.84NTVV116 pKa = 2.75

Molecular weight: 13.58 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A7M6K4|A7M6K4_9VIRU BetaC1 protein OS=Tomato yellow dwarf disease associated satellite DNA beta-[Kochi] OX=427315 GN=betaC1 PE=4 SV=1
MM1 pKa = 7.72TITYY5 pKa = 10.78NNGKK9 pKa = 9.48GIKK12 pKa = 10.02FIVDD16 pKa = 3.31VRR18 pKa = 11.84LHH20 pKa = 5.73QLLKK24 pKa = 11.02VIVQVYY30 pKa = 7.05STNKK34 pKa = 9.41PVLTGFKK41 pKa = 10.2CHH43 pKa = 6.53IPYY46 pKa = 9.57TYY48 pKa = 11.1VQMVPPFDD56 pKa = 4.28FNGAEE61 pKa = 3.91EE62 pKa = 5.24LIRR65 pKa = 11.84EE66 pKa = 4.46TLEE69 pKa = 4.77LMYY72 pKa = 10.58EE73 pKa = 4.44DD74 pKa = 5.31SDD76 pKa = 3.44ISNFKK81 pKa = 9.67QEE83 pKa = 4.06EE84 pKa = 4.41MIDD87 pKa = 4.07SIDD90 pKa = 3.54MVMMHH95 pKa = 7.34WLGHH99 pKa = 5.57MGVDD103 pKa = 3.18TVDD106 pKa = 3.61RR107 pKa = 11.84YY108 pKa = 8.71TIRR111 pKa = 11.84CRR113 pKa = 11.84NTVV116 pKa = 2.75

Molecular weight: 13.58 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

116

116

116

116.0

13.58

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

0.862 ± 0.0

1.724 ± 0.0

6.897 ± 0.0

6.034 ± 0.0

4.31 ± 0.0

5.172 ± 0.0

3.448 ± 0.0

8.621 ± 0.0

5.172 ± 0.0

6.897 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

6.897 ± 0.0

5.172 ± 0.0

3.448 ± 0.0

3.448 ± 0.0

4.31 ± 0.0

3.448 ± 0.0

7.759 ± 0.0

10.345 ± 0.0

0.862 ± 0.0

5.172 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski