Arthrobacter phage Beagle

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; unclassified Siphoviridae

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 131 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A649VMC9|A0A649VMC9_9CAUD Uncharacterized protein OS=Arthrobacter phage Beagle OX=2656522 GN=94 PE=4 SV=1
MM1 pKa = 7.38GLSISILVDD10 pKa = 3.38VPDD13 pKa = 5.92DD14 pKa = 3.71IDD16 pKa = 3.78PASVIRR22 pKa = 11.84LGEE25 pKa = 4.09RR26 pKa = 11.84CCASDD31 pKa = 2.86TGEE34 pKa = 3.88PMGIGEE40 pKa = 5.36AIQYY44 pKa = 9.92AFNDD48 pKa = 4.09PGGVTALATLGVTWTAIEE66 pKa = 4.12TAA68 pKa = 3.91

Molecular weight: 6.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A649VM56|A0A649VM56_9CAUD Portal protein OS=Arthrobacter phage Beagle OX=2656522 GN=23 PE=4 SV=1
MM1 pKa = 7.55NNFTPEE7 pKa = 3.46IRR9 pKa = 11.84LCTGICGRR17 pKa = 11.84MTRR20 pKa = 11.84NSRR23 pKa = 11.84HH24 pKa = 5.64LKK26 pKa = 10.07KK27 pKa = 10.6DD28 pKa = 3.31FPDD31 pKa = 3.53TVSRR35 pKa = 11.84QRR37 pKa = 11.84DD38 pKa = 4.13GKK40 pKa = 10.68CRR42 pKa = 11.84WCLHH46 pKa = 6.39HH47 pKa = 6.38EE48 pKa = 4.43HH49 pKa = 6.73EE50 pKa = 5.41AGAAPAEE57 pKa = 4.49RR58 pKa = 11.84ATPMSGLQPCKK69 pKa = 10.21GICGRR74 pKa = 11.84LTRR77 pKa = 11.84HH78 pKa = 5.56CRR80 pKa = 11.84VRR82 pKa = 11.84LADD85 pKa = 3.68APEE88 pKa = 4.19SVTRR92 pKa = 11.84VRR94 pKa = 11.84DD95 pKa = 4.87GKK97 pKa = 10.05CQWCLDD103 pKa = 3.82HH104 pKa = 7.84GDD106 pKa = 4.19EE107 pKa = 5.11EE108 pKa = 4.65NAQLPPRR115 pKa = 11.84TGRR118 pKa = 11.84PPRR121 pKa = 11.84TTNRR125 pKa = 11.84PVSEE129 pKa = 4.96ANVQQAAAEE138 pKa = 4.19YY139 pKa = 10.01AAYY142 pKa = 8.49TAARR146 pKa = 11.84NARR149 pKa = 11.84LARR152 pKa = 11.84RR153 pKa = 11.84EE154 pKa = 3.79QRR156 pKa = 11.84EE157 pKa = 3.73RR158 pKa = 11.84ASIQRR163 pKa = 11.84QLLAARR169 pKa = 11.84GQLLTAGSRR178 pKa = 11.84RR179 pKa = 11.84AA180 pKa = 3.35

Molecular weight: 20.2 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

131

0

131

22500

25

1625

171.8

18.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.276 ± 0.308

1.013 ± 0.147

6.244 ± 0.201

6.711 ± 0.298

3.142 ± 0.184

8.147 ± 0.247

2.356 ± 0.17

4.809 ± 0.204

4.049 ± 0.198

7.658 ± 0.211

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.436 ± 0.102

3.311 ± 0.184

5.396 ± 0.262

3.191 ± 0.15

6.338 ± 0.281

5.569 ± 0.209

7.093 ± 0.301

6.769 ± 0.24

1.978 ± 0.099

2.516 ± 0.182
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski