Delphinus delphis polyomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Zetapolyomavirus

Average proteome isoelectric point is 6.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S5M639|S5M639_9POLY Minor capsid protein OS=Delphinus delphis polyomavirus 1 OX=1891756 PE=3 SV=1
MM1 pKa = 7.52SARR4 pKa = 11.84KK5 pKa = 9.68GRR7 pKa = 11.84GAVRR11 pKa = 11.84PPSQVPKK18 pKa = 10.4LIVKK22 pKa = 10.38GGVEE26 pKa = 4.02VLGVKK31 pKa = 9.28TGPDD35 pKa = 3.15SILYY39 pKa = 8.33VEE41 pKa = 5.91CYY43 pKa = 9.4LQPRR47 pKa = 11.84MGDD50 pKa = 3.33PATNGASSGQLTRR63 pKa = 11.84NSTNEE68 pKa = 3.95TDD70 pKa = 4.85NEE72 pKa = 4.47TQQGTRR78 pKa = 11.84LARR81 pKa = 11.84YY82 pKa = 8.92SCGSIQLPLLNDD94 pKa = 3.91DD95 pKa = 4.06MTQGTILMWEE105 pKa = 3.94AFEE108 pKa = 4.92VKK110 pKa = 9.94TEE112 pKa = 3.92LVGINVLTNFHH123 pKa = 6.31SAEE126 pKa = 3.99DD127 pKa = 3.99LAWPDD132 pKa = 3.89GPGLPIQGLNFHH144 pKa = 6.69MFAVGGQPLEE154 pKa = 4.07LQGILMNHH162 pKa = 6.5LTTYY166 pKa = 10.06PDD168 pKa = 3.6DD169 pKa = 3.66VVVPNRR175 pKa = 11.84TNKK178 pKa = 9.08TPSLKK183 pKa = 10.85VLDD186 pKa = 4.24PTAKK190 pKa = 10.34SQLTEE195 pKa = 4.45DD196 pKa = 3.39GKK198 pKa = 11.4FPIEE202 pKa = 4.36CWAPDD207 pKa = 3.61PSKK210 pKa = 11.5NEE212 pKa = 3.61NTRR215 pKa = 11.84YY216 pKa = 9.51FCSLTGGTQTPPVLQQTNTVTTVLLDD242 pKa = 3.84ANGVGPLCKK251 pKa = 9.67GDD253 pKa = 3.66RR254 pKa = 11.84LFVTSADD261 pKa = 3.16IIGIHH266 pKa = 6.84KK267 pKa = 10.04DD268 pKa = 3.34ASHH271 pKa = 6.46HH272 pKa = 5.75AFLRR276 pKa = 11.84GLPRR280 pKa = 11.84FFRR283 pKa = 11.84VGLRR287 pKa = 11.84KK288 pKa = 8.79RR289 pKa = 11.84TVKK292 pKa = 10.55NPYY295 pKa = 9.03PVYY298 pKa = 11.4SMLNSLFTNLNPSITGQSMQGANSQVEE325 pKa = 4.54EE326 pKa = 4.11VSVYY330 pKa = 10.56QGTEE334 pKa = 3.96PLPADD339 pKa = 3.75PDD341 pKa = 3.32MTRR344 pKa = 11.84FINEE348 pKa = 4.53FGQEE352 pKa = 4.21TTSLPHH358 pKa = 6.28

Molecular weight: 39.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S5MND0|S5MND0_9POLY Small T antigen OS=Delphinus delphis polyomavirus 1 OX=1891756 PE=4 SV=1
MM1 pKa = 7.49ALVEE5 pKa = 4.45WRR7 pKa = 11.84PEE9 pKa = 4.2LIDD12 pKa = 3.52YY13 pKa = 7.92NFPGVRR19 pKa = 11.84WLARR23 pKa = 11.84NVEE26 pKa = 4.28YY27 pKa = 10.54FDD29 pKa = 3.6PRR31 pKa = 11.84FWASEE36 pKa = 3.62LWRR39 pKa = 11.84VFMEE43 pKa = 4.34SVARR47 pKa = 11.84EE48 pKa = 3.7GAAQIEE54 pKa = 4.43AASTALAEE62 pKa = 4.35QGRR65 pKa = 11.84SVAADD70 pKa = 4.5AIARR74 pKa = 11.84SLEE77 pKa = 3.75NANWVISEE85 pKa = 4.3TGALARR91 pKa = 11.84RR92 pKa = 11.84GLDD95 pKa = 3.04VTGALVRR102 pKa = 11.84QAGQRR107 pKa = 11.84AVQSTGSIITNAYY120 pKa = 7.79TNLGDD125 pKa = 3.97YY126 pKa = 10.82YY127 pKa = 10.97RR128 pKa = 11.84GLTPLRR134 pKa = 11.84PPQRR138 pKa = 11.84RR139 pKa = 11.84AMLRR143 pKa = 11.84EE144 pKa = 3.99LEE146 pKa = 4.08KK147 pKa = 10.84SEE149 pKa = 3.96RR150 pKa = 11.84QQTITGEE157 pKa = 4.4VVYY160 pKa = 10.21KK161 pKa = 10.92APAPGGANQRR171 pKa = 11.84ITPEE175 pKa = 3.49WMLPLILGLYY185 pKa = 7.75NHH187 pKa = 6.75PTWGVPDD194 pKa = 3.96AVTALKK200 pKa = 10.59SSQEE204 pKa = 3.89KK205 pKa = 10.31EE206 pKa = 3.98EE207 pKa = 4.1NVSKK211 pKa = 10.57KK212 pKa = 9.96RR213 pKa = 11.84KK214 pKa = 9.11RR215 pKa = 11.84SCEE218 pKa = 3.93TTQPGAKK225 pKa = 8.73TNCKK229 pKa = 9.24RR230 pKa = 11.84RR231 pKa = 11.84RR232 pKa = 11.84RR233 pKa = 11.84STRR236 pKa = 11.84RR237 pKa = 3.09

Molecular weight: 26.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1746

169

634

349.2

39.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.446 ± 1.494

2.577 ± 0.698

4.926 ± 0.732

6.529 ± 0.591

3.608 ± 0.475

6.987 ± 0.591

1.775 ± 0.366

4.811 ± 0.883

5.785 ± 0.975

10.481 ± 0.678

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.577 ± 0.391

5.04 ± 0.406

5.212 ± 0.665

3.952 ± 0.365

5.556 ± 1.184

5.727 ± 0.22

7.045 ± 0.515

5.498 ± 0.548

1.718 ± 0.395

2.749 ± 0.162
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski