Mastomys coucha papillomavirus 2

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Pipapillomavirus; Pipapillomavirus 2

Average proteome isoelectric point is 6.03

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q06RH5|Q06RH5_9PAPI Protein E6 OS=Mastomys coucha papillomavirus 2 OX=392505 GN=E6 PE=3 SV=1
MM1 pKa = 7.59LGPVPTLRR9 pKa = 11.84DD10 pKa = 3.26IEE12 pKa = 4.62LVDD15 pKa = 4.39LEE17 pKa = 4.38VLAAHH22 pKa = 6.61VPPADD27 pKa = 3.65QPDD30 pKa = 3.93VGSSSLSPDD39 pKa = 3.14SLGEE43 pKa = 4.03EE44 pKa = 4.48VEE46 pKa = 4.99LEE48 pKa = 3.84VDD50 pKa = 4.38PYY52 pKa = 11.03RR53 pKa = 11.84VATTCYY59 pKa = 10.5SCDD62 pKa = 3.16TVLRR66 pKa = 11.84FIVVAGCDD74 pKa = 3.38SLKK77 pKa = 10.81LFEE80 pKa = 4.95EE81 pKa = 4.83LLTEE85 pKa = 5.72DD86 pKa = 5.64FDD88 pKa = 4.95FLCPGCVKK96 pKa = 10.65DD97 pKa = 3.92RR98 pKa = 11.84LLRR101 pKa = 11.84KK102 pKa = 9.66RR103 pKa = 11.84NNGRR107 pKa = 11.84RR108 pKa = 11.84KK109 pKa = 9.84

Molecular weight: 12.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q06RH3|Q06RH3_9PAPI Replication protein E1 OS=Mastomys coucha papillomavirus 2 OX=392505 GN=E1 PE=3 SV=1
MM1 pKa = 7.48NSLEE5 pKa = 3.98ARR7 pKa = 11.84FDD9 pKa = 3.64AVQEE13 pKa = 4.32QILSLYY19 pKa = 10.1EE20 pKa = 4.07KK21 pKa = 10.71GSTDD25 pKa = 3.52LADD28 pKa = 3.39HH29 pKa = 5.68VKK31 pKa = 9.41YY32 pKa = 9.99WEE34 pKa = 4.7LIRR37 pKa = 11.84AEE39 pKa = 4.46GALEE43 pKa = 3.88YY44 pKa = 10.39CARR47 pKa = 11.84QSGRR51 pKa = 11.84NKK53 pKa = 10.44LGLHH57 pKa = 5.88SVPSSVGAEE66 pKa = 4.11SKK68 pKa = 10.61AKK70 pKa = 10.2KK71 pKa = 9.46AIHH74 pKa = 5.41MQMVLSSLQDD84 pKa = 3.13SSFGSEE90 pKa = 4.01PWTMADD96 pKa = 3.48TSLEE100 pKa = 4.13MYY102 pKa = 9.7EE103 pKa = 4.24RR104 pKa = 11.84TSPEE108 pKa = 3.58YY109 pKa = 9.76TFKK112 pKa = 11.12KK113 pKa = 9.88KK114 pKa = 10.61GSEE117 pKa = 4.11AEE119 pKa = 4.25VTFGSDD125 pKa = 3.12PDD127 pKa = 3.8NSVSYY132 pKa = 8.33MVWGCVYY139 pKa = 9.85TQDD142 pKa = 5.73EE143 pKa = 4.37DD144 pKa = 4.6GQWHH148 pKa = 5.74KK149 pKa = 10.81HH150 pKa = 4.5MSVVDD155 pKa = 3.84YY156 pKa = 11.22YY157 pKa = 10.96GVYY160 pKa = 9.96YY161 pKa = 10.45VDD163 pKa = 3.43HH164 pKa = 6.65SGVRR168 pKa = 11.84VYY170 pKa = 9.92YY171 pKa = 10.29HH172 pKa = 6.66QFDD175 pKa = 4.15EE176 pKa = 4.74DD177 pKa = 4.14SKK179 pKa = 10.16TFGGDD184 pKa = 2.79FWTVRR189 pKa = 11.84YY190 pKa = 9.62KK191 pKa = 11.04LQTFTSSPDD200 pKa = 3.09STTKK204 pKa = 10.65EE205 pKa = 3.96NEE207 pKa = 3.76QGLDD211 pKa = 3.67EE212 pKa = 4.9PCHH215 pKa = 5.69KK216 pKa = 10.12RR217 pKa = 11.84RR218 pKa = 11.84RR219 pKa = 11.84SSPCSTEE226 pKa = 4.05TIRR229 pKa = 11.84TPNRR233 pKa = 11.84RR234 pKa = 11.84ARR236 pKa = 11.84PSEE239 pKa = 3.92RR240 pKa = 11.84PQPTSGRR247 pKa = 11.84RR248 pKa = 11.84GRR250 pKa = 11.84LGQGEE255 pKa = 4.33RR256 pKa = 11.84TPEE259 pKa = 3.87GTRR262 pKa = 11.84PSPEE266 pKa = 3.94EE267 pKa = 3.3IGRR270 pKa = 11.84RR271 pKa = 11.84PEE273 pKa = 3.87GSEE276 pKa = 3.83RR277 pKa = 11.84SCQRR281 pKa = 11.84RR282 pKa = 11.84VPNPVHH288 pKa = 7.01CDD290 pKa = 3.36PPVILLKK297 pKa = 11.05GPTNTLKK304 pKa = 10.54CWRR307 pKa = 11.84NRR309 pKa = 11.84LRR311 pKa = 11.84RR312 pKa = 11.84RR313 pKa = 11.84HH314 pKa = 5.6FRR316 pKa = 11.84PFIKK320 pKa = 10.15ISTAFSWVEE329 pKa = 3.74DD330 pKa = 3.9RR331 pKa = 11.84DD332 pKa = 4.14SGGVTNMLVAFLDD345 pKa = 3.71SQQRR349 pKa = 11.84DD350 pKa = 3.69VFLKK354 pKa = 9.34TVPIPKK360 pKa = 9.92GSVYY364 pKa = 10.98YY365 pKa = 10.48KK366 pKa = 11.24GNFEE370 pKa = 4.24GLL372 pKa = 3.46

Molecular weight: 42.5 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2306

109

614

384.3

42.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.637 ± 0.849

2.298 ± 0.576

6.548 ± 0.323

6.071 ± 0.588

4.944 ± 0.345

7.329 ± 1.077

1.951 ± 0.249

3.903 ± 0.853

4.337 ± 0.875

8.066 ± 0.808

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.255 ± 0.417

4.163 ± 0.649

6.288 ± 0.96

3.99 ± 0.483

6.852 ± 0.437

7.502 ± 0.661

6.808 ± 0.4

7.112 ± 0.772

1.171 ± 0.311

2.775 ± 0.361
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski