Carrot Ch virus 2

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Trivirinae; Chordovirus

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0A0P9V6|A0A0A0P9V6_9VIRU ORF1 OS=Carrot Ch virus 2 OX=1425362 PE=4 SV=1
MM1 pKa = 7.35SLVDD5 pKa = 3.77INKK8 pKa = 9.24FCALVSKK15 pKa = 10.39GASSVEE21 pKa = 4.33AIDD24 pKa = 4.08KK25 pKa = 10.95GNIYY29 pKa = 10.66GDD31 pKa = 3.94SSWLKK36 pKa = 9.7FNQVSAIRR44 pKa = 11.84KK45 pKa = 8.08FEE47 pKa = 4.61SNISIEE53 pKa = 4.71LDD55 pKa = 3.78DD56 pKa = 4.63GDD58 pKa = 4.24KK59 pKa = 11.33SLVIPNIPLVSSFEE73 pKa = 4.1VATVKK78 pKa = 10.68KK79 pKa = 10.27SLKK82 pKa = 9.69NANFLHH88 pKa = 6.65LGGIVISIQALFAEE102 pKa = 4.75NKK104 pKa = 9.65GVTGTAVLADD114 pKa = 3.87KK115 pKa = 10.53RR116 pKa = 11.84WNNLDD121 pKa = 3.25QAIIGAFHH129 pKa = 6.98FNLDD133 pKa = 3.03KK134 pKa = 11.03RR135 pKa = 11.84RR136 pKa = 11.84ADD138 pKa = 4.21FIMRR142 pKa = 11.84PNFDD146 pKa = 3.06VSLNDD151 pKa = 4.19PMLCDD156 pKa = 5.27SISLMLKK163 pKa = 10.37FEE165 pKa = 4.39NLDD168 pKa = 3.6MQVSSIPINVSVGLIARR185 pKa = 11.84FYY187 pKa = 9.67NTIDD191 pKa = 3.56PGIKK195 pKa = 9.96FADD198 pKa = 4.41EE199 pKa = 3.95EE200 pKa = 4.7LKK202 pKa = 9.78MQGLIEE208 pKa = 4.94AEE210 pKa = 4.65GIDD213 pKa = 4.4KK214 pKa = 11.11NDD216 pKa = 3.64MLHH219 pKa = 7.18SIGDD223 pKa = 3.83LADD226 pKa = 3.68TFSNPAIFNPTIVNNRR242 pKa = 11.84KK243 pKa = 9.03YY244 pKa = 10.98DD245 pKa = 3.44RR246 pKa = 11.84GLFKK250 pKa = 11.05DD251 pKa = 3.55KK252 pKa = 11.35GFIKK256 pKa = 10.19QIRR259 pKa = 11.84GSRR262 pKa = 11.84SDD264 pKa = 3.25DD265 pKa = 3.37SKK267 pKa = 11.22ALRR270 pKa = 11.84RR271 pKa = 11.84VGRR274 pKa = 11.84FNAPSSSRR282 pKa = 11.84RR283 pKa = 11.84FDD285 pKa = 3.58QIKK288 pKa = 10.26VDD290 pKa = 3.59PLFYY294 pKa = 11.04DD295 pKa = 3.79KK296 pKa = 10.72IKK298 pKa = 10.68RR299 pKa = 11.84GNINSWLNNEE309 pKa = 4.4LPKK312 pKa = 10.61SSEE315 pKa = 4.13RR316 pKa = 11.84EE317 pKa = 3.67EE318 pKa = 3.9EE319 pKa = 4.4RR320 pKa = 11.84YY321 pKa = 10.19SEE323 pKa = 4.18TGSEE327 pKa = 4.03GRR329 pKa = 11.84VEE331 pKa = 4.21IVEE334 pKa = 4.28HH335 pKa = 6.26

Molecular weight: 37.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0A0P507|A0A0A0P507_9VIRU ORF2 OS=Carrot Ch virus 2 OX=1425362 PE=4 SV=1
MM1 pKa = 7.8SYY3 pKa = 11.19LSLQRR8 pKa = 11.84EE9 pKa = 3.98RR10 pKa = 11.84RR11 pKa = 11.84SDD13 pKa = 3.37IVKK16 pKa = 10.28LALKK20 pKa = 10.57EE21 pKa = 3.95EE22 pKa = 4.16LRR24 pKa = 11.84SLNTEE29 pKa = 3.35IDD31 pKa = 3.42EE32 pKa = 4.47KK33 pKa = 10.8GTYY36 pKa = 9.2FKK38 pKa = 10.79QVLEE42 pKa = 4.09YY43 pKa = 10.57YY44 pKa = 10.25IMYY47 pKa = 10.08FVLNMAEE54 pKa = 4.54MGTSPDD60 pKa = 3.04TVYY63 pKa = 10.66PSEE66 pKa = 4.09NFEE69 pKa = 4.56LKK71 pKa = 10.27PVTMKK76 pKa = 10.84SGDD79 pKa = 3.6EE80 pKa = 3.94PKK82 pKa = 10.64TFILKK87 pKa = 9.63MNLITCIDD95 pKa = 4.76RR96 pKa = 11.84IQDD99 pKa = 3.52LSEE102 pKa = 3.86NRR104 pKa = 11.84VDD106 pKa = 6.05LGDD109 pKa = 3.48LTLRR113 pKa = 11.84SFMRR117 pKa = 11.84PFADD121 pKa = 2.98IAKK124 pKa = 9.67KK125 pKa = 9.89QLQKK129 pKa = 10.8RR130 pKa = 11.84GVDD133 pKa = 4.0GILARR138 pKa = 11.84KK139 pKa = 8.58YY140 pKa = 10.27PRR142 pKa = 11.84VCRR145 pKa = 11.84GAKK148 pKa = 10.19HH149 pKa = 5.88MGFDD153 pKa = 4.74FNQDD157 pKa = 3.43LQSSEE162 pKa = 4.11LSNSEE167 pKa = 3.64MRR169 pKa = 11.84VKK171 pKa = 10.72QNLGRR176 pKa = 11.84VMFNRR181 pKa = 11.84GLKK184 pKa = 9.07VANLEE189 pKa = 4.18EE190 pKa = 4.39SSSIDD195 pKa = 3.54FEE197 pKa = 4.47

Molecular weight: 22.85 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

2388

197

1856

796.0

91.1

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.276 ± 0.42

1.675 ± 0.447

7.328 ± 0.217

6.826 ± 0.362

6.784 ± 0.632

5.36 ± 0.249

1.424 ± 0.295

7.161 ± 0.622

9.213 ± 0.843

9.757 ± 0.418

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.722 ± 0.586

4.983 ± 0.86

3.141 ± 0.039

2.806 ± 0.31

4.899 ± 0.891

8.501 ± 0.372

2.889 ± 0.298

5.318 ± 0.243

0.754 ± 0.192

3.183 ± 0.474
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski