Duck hepatitis B virus (strain Germany/DHBV-3) (DHBV)

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Blubervirales; Hepadnaviridae; Avihepadnavirus; Duck hepatitis B virus

Average proteome isoelectric point is 8.7

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|P0C691|DPOL_DHBV3 Protein P OS=Duck hepatitis B virus (strain Germany/DHBV-3) OX=489542 GN=P PE=1 SV=1
MM1 pKa = 7.08GQHH4 pKa = 6.83PAKK7 pKa = 10.86SMDD10 pKa = 2.88VRR12 pKa = 11.84RR13 pKa = 11.84IEE15 pKa = 4.69GGEE18 pKa = 3.94LLLNQLAGRR27 pKa = 11.84MIPKK31 pKa = 8.61GTLTWSGKK39 pKa = 10.12FPTIDD44 pKa = 2.93HH45 pKa = 6.27VLDD48 pKa = 3.79HH49 pKa = 6.1VQTMEE54 pKa = 5.18EE55 pKa = 4.51INTLQQQGAWPAGAGRR71 pKa = 11.84RR72 pKa = 11.84VGLSNPAPQEE82 pKa = 3.66IPQPQWTPEE91 pKa = 3.83EE92 pKa = 4.01DD93 pKa = 3.23QKK95 pKa = 11.68ARR97 pKa = 11.84EE98 pKa = 3.95AFRR101 pKa = 11.84RR102 pKa = 11.84YY103 pKa = 8.96QEE105 pKa = 3.91EE106 pKa = 4.36RR107 pKa = 11.84PPEE110 pKa = 4.18TTTIPPTSPTQWKK123 pKa = 8.42LQPGDD128 pKa = 4.58DD129 pKa = 4.21PLLGNQSLLEE139 pKa = 4.06THH141 pKa = 7.31PLYY144 pKa = 9.63QTEE147 pKa = 4.09PAVPVIKK154 pKa = 9.85TPPLKK159 pKa = 10.58KK160 pKa = 10.34KK161 pKa = 10.19MSGTFGGILAGLIGLLVSFFLLIKK185 pKa = 10.07ILEE188 pKa = 4.06ILRR191 pKa = 11.84RR192 pKa = 11.84LDD194 pKa = 3.1WWWISLSSPKK204 pKa = 10.95GKK206 pKa = 8.31MQCAFQDD213 pKa = 3.1TGAQISPHH221 pKa = 5.65YY222 pKa = 10.44AGSCPWGCPGFLWTYY237 pKa = 10.39LRR239 pKa = 11.84LFIIFLLILLVAAGLLYY256 pKa = 10.14LTDD259 pKa = 3.77NGSTILGKK267 pKa = 9.65LQWASVSALFSSISSLLPSDD287 pKa = 3.98PKK289 pKa = 11.3SLVALTFGLSLIWMTSSSATQTLVTLTQLATLSALFYY326 pKa = 10.91KK327 pKa = 10.61SS328 pKa = 2.99

Molecular weight: 36.22 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|P0C6J9|HBEAG_DHBV3 External core antigen OS=Duck hepatitis B virus (strain Germany/DHBV-3) OX=489542 GN=C PE=3 SV=1
MM1 pKa = 8.23DD2 pKa = 4.61INASRR7 pKa = 11.84ALANVYY13 pKa = 10.06DD14 pKa = 4.55LPDD17 pKa = 4.02DD18 pKa = 4.66FFPKK22 pKa = 9.79IDD24 pKa = 4.28DD25 pKa = 4.0LVRR28 pKa = 11.84DD29 pKa = 4.15AKK31 pKa = 10.95DD32 pKa = 2.99ALEE35 pKa = 4.58PYY37 pKa = 8.58WRR39 pKa = 11.84SDD41 pKa = 3.62SIKK44 pKa = 10.32KK45 pKa = 9.66HH46 pKa = 4.88VLIATHH52 pKa = 6.68FVDD55 pKa = 6.26LIEE58 pKa = 5.8DD59 pKa = 4.56FWQTTQGMHH68 pKa = 7.15EE69 pKa = 4.02IAEE72 pKa = 4.32ALRR75 pKa = 11.84AVIPPTTTPVPQGYY89 pKa = 9.89LIQHH93 pKa = 6.94DD94 pKa = 4.2EE95 pKa = 4.3AEE97 pKa = 4.83EE98 pKa = 4.16IPLGDD103 pKa = 3.73LFKK106 pKa = 10.75HH107 pKa = 4.38QEE109 pKa = 3.68EE110 pKa = 5.1RR111 pKa = 11.84IVSFQPDD118 pKa = 3.7YY119 pKa = 10.99PITARR124 pKa = 11.84IHH126 pKa = 5.86AHH128 pKa = 5.52LKK130 pKa = 10.23AYY132 pKa = 10.51AKK134 pKa = 10.36INEE137 pKa = 4.18EE138 pKa = 3.87SLDD141 pKa = 3.51RR142 pKa = 11.84ARR144 pKa = 11.84RR145 pKa = 11.84LLWWHH150 pKa = 5.78YY151 pKa = 11.24NCLLWGEE158 pKa = 4.52ANVTNYY164 pKa = 9.84ISRR167 pKa = 11.84LRR169 pKa = 11.84TWLSTPEE176 pKa = 3.92RR177 pKa = 11.84YY178 pKa = 9.54RR179 pKa = 11.84GRR181 pKa = 11.84DD182 pKa = 3.19APTIEE187 pKa = 5.55AITRR191 pKa = 11.84PIQVAQGGRR200 pKa = 11.84KK201 pKa = 4.97TTSGTRR207 pKa = 11.84KK208 pKa = 9.27PRR210 pKa = 11.84GLEE213 pKa = 3.42PRR215 pKa = 11.84RR216 pKa = 11.84RR217 pKa = 11.84KK218 pKa = 10.23VKK220 pKa = 7.88TTVVYY225 pKa = 10.22GRR227 pKa = 11.84RR228 pKa = 11.84RR229 pKa = 11.84SKK231 pKa = 10.5SRR233 pKa = 11.84EE234 pKa = 3.53RR235 pKa = 11.84RR236 pKa = 11.84APTPQRR242 pKa = 11.84AGSPLPRR249 pKa = 11.84SSSSHH254 pKa = 5.8HH255 pKa = 6.7RR256 pKa = 11.84SPSPRR261 pKa = 11.84KK262 pKa = 9.39

Molecular weight: 30.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

1

5

1848

167

786

369.6

41.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.223 ± 0.756

1.407 ± 0.269

4.437 ± 0.522

4.221 ± 0.564

3.68 ± 0.44

5.844 ± 0.683

2.814 ± 0.455

5.952 ± 0.469

5.357 ± 0.641

10.877 ± 1.696

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.623 ± 0.268

3.03 ± 0.855

7.251 ± 0.479

4.004 ± 0.559

7.468 ± 1.407

8.766 ± 0.797

6.818 ± 0.429

4.762 ± 0.514

2.543 ± 0.336

2.922 ± 0.296
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski