Luffa begomovirus betasatellite

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite; unclassified Betasatellite

Average proteome isoelectric point is 5.25

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M4ARL0|A0A0M4ARL0_9VIRU C1 OS=Luffa begomovirus betasatellite OX=1705090 GN=C1 PE=4 SV=1
MM1 pKa = 7.89DD2 pKa = 5.41HH3 pKa = 6.63SQPHH7 pKa = 6.51NNTKK11 pKa = 10.49YY12 pKa = 9.85LTFRR16 pKa = 11.84SINAGIMINSITQAEE31 pKa = 4.44MTRR34 pKa = 11.84SGTNKK39 pKa = 9.62QGVKK43 pKa = 8.4FTVDD47 pKa = 3.1VRR49 pKa = 11.84IMEE52 pKa = 3.99NMKK55 pKa = 10.08IFIHH59 pKa = 6.17IRR61 pKa = 11.84IISTMSPALIKK72 pKa = 10.99YY73 pKa = 8.87EE74 pKa = 4.49GIVKK78 pKa = 8.12YY79 pKa = 9.0TYY81 pKa = 11.57GDD83 pKa = 3.39MQVPFDD89 pKa = 4.14FNGFEE94 pKa = 4.42GNIIANFLFANNGAKK109 pKa = 9.48IEE111 pKa = 4.34EE112 pKa = 4.35IEE114 pKa = 4.88IEE116 pKa = 4.88DD117 pKa = 3.24IVQRR121 pKa = 11.84LDD123 pKa = 3.24ILVLEE128 pKa = 4.49NPEE131 pKa = 4.0ILGMDD136 pKa = 3.91VIEE139 pKa = 4.67PYY141 pKa = 10.87VFNKK145 pKa = 10.0KK146 pKa = 8.02FTVV149 pKa = 3.26

Molecular weight: 17.07 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M4ARL0|A0A0M4ARL0_9VIRU C1 OS=Luffa begomovirus betasatellite OX=1705090 GN=C1 PE=4 SV=1
MM1 pKa = 7.89DD2 pKa = 5.41HH3 pKa = 6.63SQPHH7 pKa = 6.51NNTKK11 pKa = 10.49YY12 pKa = 9.85LTFRR16 pKa = 11.84SINAGIMINSITQAEE31 pKa = 4.44MTRR34 pKa = 11.84SGTNKK39 pKa = 9.62QGVKK43 pKa = 8.4FTVDD47 pKa = 3.1VRR49 pKa = 11.84IMEE52 pKa = 3.99NMKK55 pKa = 10.08IFIHH59 pKa = 6.17IRR61 pKa = 11.84IISTMSPALIKK72 pKa = 10.99YY73 pKa = 8.87EE74 pKa = 4.49GIVKK78 pKa = 8.12YY79 pKa = 9.0TYY81 pKa = 11.57GDD83 pKa = 3.39MQVPFDD89 pKa = 4.14FNGFEE94 pKa = 4.42GNIIANFLFANNGAKK109 pKa = 9.48IEE111 pKa = 4.34EE112 pKa = 4.35IEE114 pKa = 4.88IEE116 pKa = 4.88DD117 pKa = 3.24IVQRR121 pKa = 11.84LDD123 pKa = 3.24ILVLEE128 pKa = 4.49NPEE131 pKa = 4.0ILGMDD136 pKa = 3.91VIEE139 pKa = 4.67PYY141 pKa = 10.87VFNKK145 pKa = 10.0KK146 pKa = 8.02FTVV149 pKa = 3.26

Molecular weight: 17.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

149

149

149

149.0

17.07

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.027 ± 0.0

0.0 ± 0.0

4.698 ± 0.0

7.383 ± 0.0

6.711 ± 0.0

6.04 ± 0.0

2.013 ± 0.0

14.094 ± 0.0

6.04 ± 0.0

4.698 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

5.369 ± 0.0

8.725 ± 0.0

3.356 ± 0.0

3.356 ± 0.0

3.356 ± 0.0

4.027 ± 0.0

6.04 ± 0.0

6.711 ± 0.0

0.0 ± 0.0

3.356 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski