Lily virus X

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 6.38

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q4LD43|Q4LD43_LVX Movement protein TGBp3 OS=Lily virus X OX=12194 PE=3 SV=1
MM1 pKa = 6.63TTFVPDD7 pKa = 3.43AKK9 pKa = 9.8TWADD13 pKa = 3.34TAYY16 pKa = 8.26TAQSEE21 pKa = 4.83SVATAEE27 pKa = 4.23EE28 pKa = 4.25LQSIATLWEE37 pKa = 5.03GIGIPAANFFDD48 pKa = 4.52VAFQLAMRR56 pKa = 11.84CSDD59 pKa = 3.12GHH61 pKa = 6.22ASSLTVLSGNCTVAPTVTLKK81 pKa = 10.95AAAGLVKK88 pKa = 10.46AVLPLRR94 pKa = 11.84QFCRR98 pKa = 11.84YY99 pKa = 7.73YY100 pKa = 11.4AKK102 pKa = 10.48FVWNWRR108 pKa = 11.84LSHH111 pKa = 7.1DD112 pKa = 4.46LPPANWADD120 pKa = 3.5SQFPAEE126 pKa = 4.09ARR128 pKa = 11.84FAAFDD133 pKa = 3.83FFDD136 pKa = 4.1GVTNSAAPQPPDD148 pKa = 3.32GLIRR152 pKa = 11.84PPTEE156 pKa = 4.36LEE158 pKa = 3.69LSAAQTAKK166 pKa = 10.14FAALARR172 pKa = 11.84VRR174 pKa = 11.84GSGFVTTAAEE184 pKa = 4.18ITHH187 pKa = 5.79GRR189 pKa = 11.84AEE191 pKa = 4.27VSRR194 pKa = 11.84TMLLSPPP201 pKa = 3.88

Molecular weight: 21.57 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q4LD45|Q4LD45_LVX Triple gene block protein 1 OS=Lily virus X OX=12194 PE=4 SV=1
MM1 pKa = 7.95PLTPPPDD8 pKa = 3.42YY9 pKa = 9.37TKK11 pKa = 10.79PFIAVVVGGTLAAFVLLLTRR31 pKa = 11.84NTLPHH36 pKa = 6.49TGDD39 pKa = 3.73NLHH42 pKa = 6.53SLPHH46 pKa = 6.52GGTYY50 pKa = 10.36CDD52 pKa = 3.16GTKK55 pKa = 10.13RR56 pKa = 11.84IRR58 pKa = 11.84YY59 pKa = 7.05GGPHH63 pKa = 7.05RR64 pKa = 11.84SHH66 pKa = 8.1VPEE69 pKa = 5.06LPAKK73 pKa = 8.75SWALITVVAILIALHH88 pKa = 6.21FSCLRR93 pKa = 11.84THH95 pKa = 6.89RR96 pKa = 11.84VHH98 pKa = 7.47RR99 pKa = 11.84CVLCHH104 pKa = 5.44TTSGG108 pKa = 3.54

Molecular weight: 11.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1901

78

1298

380.2

42.28

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.469 ± 1.65

2.052 ± 0.641

5.313 ± 0.654

4.892 ± 0.841

4.208 ± 0.457

5.576 ± 0.558

4.261 ± 0.782

5.26 ± 0.804

4.366 ± 1.266

9.732 ± 0.557

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.946 ± 0.507

3.051 ± 0.324

6.733 ± 0.579

4.05 ± 1.036

4.997 ± 0.323

5.26 ± 0.52

7.996 ± 0.784

6.365 ± 0.928

1.105 ± 0.262

3.367 ± 0.449
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski