Rhynchosia yellow mosaic India virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 7.81

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E7CWL3|E7CWL3_9GEMI Capsid protein OS=Rhynchosia yellow mosaic India virus OX=935473 GN=AV1 PE=3 SV=1
MM1 pKa = 8.02DD2 pKa = 4.49LHH4 pKa = 6.74NHH6 pKa = 5.38VEE8 pKa = 4.33HH9 pKa = 6.11QVSDD13 pKa = 4.18TIDD16 pKa = 3.59KK17 pKa = 10.81NVVSSTSDD25 pKa = 3.18DD26 pKa = 3.55SSNAFSLLCLGHH38 pKa = 6.66WMQVQVVPLGCRR50 pKa = 11.84SSIFDD55 pKa = 3.75EE56 pKa = 4.28LLIAVMRR63 pKa = 11.84RR64 pKa = 11.84RR65 pKa = 11.84YY66 pKa = 9.98RR67 pKa = 11.84NSALAWSLEE76 pKa = 4.08RR77 pKa = 11.84KK78 pKa = 9.77FEE80 pKa = 3.77MSLRR84 pKa = 11.84KK85 pKa = 9.75NSNPNEE91 pKa = 3.81LLGYY95 pKa = 10.43CSS97 pKa = 3.56

Molecular weight: 11.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E7CWL4|E7CWL4_9GEMI Transcriptional activator protein OS=Rhynchosia yellow mosaic India virus OX=935473 GN=AC2 PE=3 SV=1
MM1 pKa = 8.06PKK3 pKa = 10.14RR4 pKa = 11.84NYY6 pKa = 8.54DD7 pKa = 3.61TAFSSPLSVVRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 3.26SPMALPAPASSAQGTTRR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84RR44 pKa = 11.84WTNRR48 pKa = 11.84PMWRR52 pKa = 11.84KK53 pKa = 8.19PRR55 pKa = 11.84FYY57 pKa = 10.75RR58 pKa = 11.84LYY60 pKa = 9.25RR61 pKa = 11.84TPDD64 pKa = 3.1VPRR67 pKa = 11.84GCEE70 pKa = 4.34GPCKK74 pKa = 10.21VQSFEE79 pKa = 3.84QRR81 pKa = 11.84HH82 pKa = 6.27DD83 pKa = 3.18IAHH86 pKa = 6.13TGKK89 pKa = 10.45VICISDD95 pKa = 3.51VTRR98 pKa = 11.84GNGITHH104 pKa = 6.78RR105 pKa = 11.84VGKK108 pKa = 9.44RR109 pKa = 11.84FCVKK113 pKa = 9.96SVYY116 pKa = 8.94ITGKK120 pKa = 9.34VWMDD124 pKa = 3.29EE125 pKa = 4.15NIKK128 pKa = 10.71SKK130 pKa = 10.61NHH132 pKa = 5.84TNTVMFKK139 pKa = 10.21LCRR142 pKa = 11.84DD143 pKa = 3.38RR144 pKa = 11.84RR145 pKa = 11.84PFGTPMDD152 pKa = 4.58FGQVFNMYY160 pKa = 10.66DD161 pKa = 3.86NEE163 pKa = 4.34PSTATVKK170 pKa = 10.85NDD172 pKa = 2.82LRR174 pKa = 11.84DD175 pKa = 3.34RR176 pKa = 11.84FQVLRR181 pKa = 11.84RR182 pKa = 11.84FNATVTGGQYY192 pKa = 10.63ACKK195 pKa = 8.94EE196 pKa = 3.74QAMVNRR202 pKa = 11.84FYY204 pKa = 11.0RR205 pKa = 11.84VNNHH209 pKa = 4.66VVYY212 pKa = 10.63NHH214 pKa = 5.84QEE216 pKa = 3.45AAKK219 pKa = 10.4YY220 pKa = 9.25EE221 pKa = 4.13NHH223 pKa = 6.46TEE225 pKa = 3.99NALLLYY231 pKa = 7.29MACTHH236 pKa = 7.07ASNPVYY242 pKa = 9.86ATLKK246 pKa = 9.47IRR248 pKa = 11.84IYY250 pKa = 10.69FYY252 pKa = 11.26DD253 pKa = 3.31SVGNN257 pKa = 3.81

Molecular weight: 29.91 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1656

97

362

207.0

23.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.133 ± 0.601

2.355 ± 0.349

5.193 ± 0.431

5.133 ± 0.612

4.891 ± 0.26

4.589 ± 0.491

2.717 ± 0.447

5.857 ± 0.606

6.763 ± 0.733

7.246 ± 0.701

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.14 ± 0.6

6.401 ± 0.383

5.012 ± 0.313

4.046 ± 0.512

6.944 ± 1.069

8.937 ± 0.713

5.435 ± 0.51

5.374 ± 0.751

1.147 ± 0.12

3.684 ± 0.46
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski