Pauljensenia hongkongensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Actinomycetales;

Average proteome isoelectric point is 6.14

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1597 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1D8B423|A0A1D8B423_9ACTO Dihydrodipicolinate synthase family protein OS=Pauljensenia hongkongensis OX=178339 GN=BH719_08625 PE=3 SV=1
MM1 pKa = 7.3TDD3 pKa = 3.01VYY5 pKa = 11.53VEE7 pKa = 4.25AGDD10 pKa = 4.62LEE12 pKa = 4.39RR13 pKa = 11.84LHH15 pKa = 8.15SGVDD19 pKa = 3.52AVADD23 pKa = 3.67GLAQVRR29 pKa = 11.84VGDD32 pKa = 3.7TAGYY36 pKa = 9.8LPAGMVGSGSASVVMGACDD55 pKa = 3.67TIDD58 pKa = 3.58GLVEE62 pKa = 4.13GVVEE66 pKa = 4.19ALRR69 pKa = 11.84DD70 pKa = 3.53YY71 pKa = 11.01SSNVGEE77 pKa = 4.62TIAQFVATEE86 pKa = 4.11DD87 pKa = 3.73ANTVAFQNIANSSGVNN103 pKa = 3.29

Molecular weight: 10.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1D8B355|A0A1D8B355_9ACTO Uncharacterized protein OS=Pauljensenia hongkongensis OX=178339 GN=BH719_06740 PE=4 SV=1
MM1 pKa = 5.72TTKK4 pKa = 9.84RR5 pKa = 11.84TFQPNNRR12 pKa = 11.84RR13 pKa = 11.84RR14 pKa = 11.84SKK16 pKa = 8.58THH18 pKa = 5.46GFRR21 pKa = 11.84LRR23 pKa = 11.84MSTRR27 pKa = 11.84AGRR30 pKa = 11.84AILANRR36 pKa = 11.84RR37 pKa = 11.84RR38 pKa = 11.84KK39 pKa = 9.83GRR41 pKa = 11.84AKK43 pKa = 10.68LSAA46 pKa = 3.92

Molecular weight: 5.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1597

0

1597

546396

37

2402

342.1

36.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.424 ± 0.081

0.814 ± 0.018

6.059 ± 0.053

5.517 ± 0.059

2.942 ± 0.031

9.59 ± 0.062

1.906 ± 0.024

4.122 ± 0.043

2.262 ± 0.04

9.24 ± 0.065

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.175 ± 0.027

2.078 ± 0.035

5.56 ± 0.051

2.957 ± 0.04

7.242 ± 0.067

6.079 ± 0.048

5.63 ± 0.046

8.654 ± 0.059

1.573 ± 0.027

2.178 ± 0.031
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski