Sphingomonas palmae

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3122 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H7Q6T2|A0A1H7Q6T2_9SPHN Sporulation related domain-containing protein OS=Sphingomonas palmae OX=1855283 GN=SAMN05216382_2050 PE=4 SV=1
MM1 pKa = 7.7HH2 pKa = 7.38ITRR5 pKa = 11.84LPLGEE10 pKa = 4.17TAPAEE15 pKa = 4.12ADD17 pKa = 3.77CISIEE22 pKa = 4.0RR23 pKa = 11.84RR24 pKa = 11.84PDD26 pKa = 2.98GRR28 pKa = 11.84FSLNATALMACGDD41 pKa = 3.82TDD43 pKa = 3.66EE44 pKa = 4.88VEE46 pKa = 4.39SVSMIGSEE54 pKa = 4.13PYY56 pKa = 10.37DD57 pKa = 3.93RR58 pKa = 11.84YY59 pKa = 11.46DD60 pKa = 3.58DD61 pKa = 4.72AEE63 pKa = 4.24AAGLAWAAEE72 pKa = 4.23HH73 pKa = 6.65CAGEE77 pKa = 4.68VYY79 pKa = 10.7VSALDD84 pKa = 3.47

Molecular weight: 8.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H7GAE1|A0A1H7GAE1_9SPHN Ribosomal protein S18 acetylase RimI OS=Sphingomonas palmae OX=1855283 GN=SAMN05216382_0215 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATVGGRR28 pKa = 11.84AVIRR32 pKa = 11.84ARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.02KK41 pKa = 10.61LSAA44 pKa = 4.03

Molecular weight: 5.05 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3122

0

3122

994220

29

1961

318.5

34.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.248 ± 0.076

0.718 ± 0.011

6.081 ± 0.036

5.055 ± 0.04

3.34 ± 0.026

8.839 ± 0.047

1.969 ± 0.023

4.577 ± 0.029

2.612 ± 0.033

9.802 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.262 ± 0.023

2.442 ± 0.035

5.299 ± 0.029

3.093 ± 0.026

7.817 ± 0.044

4.977 ± 0.029

5.603 ± 0.035

7.702 ± 0.033

1.426 ± 0.021

2.139 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski