Micromonospora coxensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micromonosporales; Micromonosporaceae; Micromonospora

Average proteome isoelectric point is 6.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5889 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1C5GWS8|A0A1C5GWS8_9ACTN Uncharacterized protein OS=Micromonospora coxensis OX=356852 GN=GA0070614_0491 PE=4 SV=1
MM1 pKa = 8.1PYY3 pKa = 10.54LPDD6 pKa = 3.55LTTVLVDD13 pKa = 3.83GARR16 pKa = 11.84ITQGGVEE23 pKa = 4.22YY24 pKa = 10.49VIKK27 pKa = 10.7ARR29 pKa = 11.84GVGMVTLPSGQVVGCDD45 pKa = 3.44PLIAPDD51 pKa = 3.51TAAPFTVTVEE61 pKa = 3.98PGRR64 pKa = 11.84YY65 pKa = 9.3RR66 pKa = 11.84LDD68 pKa = 2.88AWVAAVHH75 pKa = 5.56QSGSEE80 pKa = 4.01PQDD83 pKa = 2.89RR84 pKa = 11.84TAALQLVISDD94 pKa = 3.76QPTMRR99 pKa = 11.84WEE101 pKa = 3.95LALTNGQDD109 pKa = 3.69PTEE112 pKa = 4.44LGADD116 pKa = 3.66GFFGYY121 pKa = 9.69PVDD124 pKa = 4.28AGVGTLADD132 pKa = 3.71AVAVGALAHH141 pKa = 6.52WEE143 pKa = 3.86FDD145 pKa = 3.43QVDD148 pKa = 4.11EE149 pKa = 4.49VFIPAQVPPAPAAVDD164 pKa = 4.83AITDD168 pKa = 3.72EE169 pKa = 4.48ASGANVIIVSSGWGDD184 pKa = 3.85GIYY187 pKa = 8.61PTFIGYY193 pKa = 9.31AADD196 pKa = 4.2GEE198 pKa = 4.7VTSYY202 pKa = 9.43VTDD205 pKa = 3.85FLVIPNQTAA214 pKa = 2.68

Molecular weight: 22.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1C5II24|A0A1C5II24_9ACTN Uncharacterized protein OS=Micromonospora coxensis OX=356852 GN=GA0070614_2798 PE=4 SV=1
MM1 pKa = 7.28GSVVKK6 pKa = 10.49KK7 pKa = 9.45RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.48RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.7LLRR22 pKa = 11.84KK23 pKa = 7.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84RR30 pKa = 11.84LGKK33 pKa = 10.04

Molecular weight: 4.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5889

0

5889

1993409

29

9877

338.5

36.08

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.356 ± 0.049

0.742 ± 0.008

6.171 ± 0.026

4.982 ± 0.029

2.568 ± 0.017

9.55 ± 0.035

2.143 ± 0.015

2.868 ± 0.019

1.535 ± 0.02

10.538 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.536 ± 0.012

1.632 ± 0.02

6.546 ± 0.033

2.596 ± 0.018

8.634 ± 0.038

4.474 ± 0.022

6.183 ± 0.027

9.311 ± 0.032

1.618 ± 0.014

2.016 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski