Paracoccus saliphilus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4382 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1N7KPQ9|A0A1N7KPQ9_9RHOB Acyl-CoA dehydrogenase OS=Paracoccus saliphilus OX=405559 GN=SAMN05421772_102152 PE=3 SV=1
MM1 pKa = 7.25NCIGAASEE9 pKa = 4.18LTEE12 pKa = 3.99GAVPRR17 pKa = 11.84EE18 pKa = 4.67VYY20 pKa = 10.42VLPHH24 pKa = 6.46RR25 pKa = 11.84LITALCLSLSPAAALAHH42 pKa = 4.93PHH44 pKa = 5.74VYY46 pKa = 9.64IDD48 pKa = 4.68AGLTLILDD56 pKa = 4.02DD57 pKa = 5.0SGALTGFEE65 pKa = 4.56VEE67 pKa = 3.7WSYY70 pKa = 12.28DD71 pKa = 3.42EE72 pKa = 5.86LYY74 pKa = 11.1SLLIIEE80 pKa = 5.86DD81 pKa = 3.63MGLDD85 pKa = 3.5QDD87 pKa = 4.0GDD89 pKa = 4.03GVLTEE94 pKa = 4.8EE95 pKa = 4.5EE96 pKa = 3.9NALIQGFDD104 pKa = 3.84SDD106 pKa = 4.51WEE108 pKa = 4.33PGFDD112 pKa = 3.14GRR114 pKa = 11.84LYY116 pKa = 10.26PRR118 pKa = 11.84VDD120 pKa = 3.07GRR122 pKa = 11.84PVVLEE127 pKa = 3.96DD128 pKa = 3.51VRR130 pKa = 11.84DD131 pKa = 4.55FTAEE135 pKa = 3.82YY136 pKa = 10.23RR137 pKa = 11.84DD138 pKa = 3.32GRR140 pKa = 11.84LISRR144 pKa = 11.84HH145 pKa = 5.22LHH147 pKa = 5.91PLAEE151 pKa = 4.69PLPMEE156 pKa = 5.25APLQVQVYY164 pKa = 9.86DD165 pKa = 3.46PEE167 pKa = 4.84FYY169 pKa = 11.17VDD171 pKa = 4.67FSMPEE176 pKa = 3.72VPVIEE181 pKa = 4.3GRR183 pKa = 11.84EE184 pKa = 3.97DD185 pKa = 3.93CEE187 pKa = 4.49VEE189 pKa = 5.22LIPGDD194 pKa = 3.82PSAAPDD200 pKa = 3.74AYY202 pKa = 10.53RR203 pKa = 11.84EE204 pKa = 4.33AIEE207 pKa = 4.37AVLGAGTDD215 pKa = 3.53PAEE218 pKa = 4.44ADD220 pKa = 3.81VVTVDD225 pKa = 3.86IGSAGADD232 pKa = 3.38EE233 pKa = 5.05ADD235 pKa = 3.51IRR237 pKa = 11.84CDD239 pKa = 3.47PGQGGG244 pKa = 3.37

Molecular weight: 26.37 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1N7K9V0|A0A1N7K9V0_9RHOB Pyrroline-5-carboxylate reductase OS=Paracoccus saliphilus OX=405559 GN=proC PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.37GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.12GGRR28 pKa = 11.84RR29 pKa = 11.84VLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.69GRR39 pKa = 11.84KK40 pKa = 8.91RR41 pKa = 11.84LSAA44 pKa = 3.96

Molecular weight: 5.12 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4382

0

4382

1362584

25

1879

311.0

33.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.94 ± 0.044

0.874 ± 0.013

5.948 ± 0.033

6.196 ± 0.038

3.627 ± 0.023

8.777 ± 0.036

2.105 ± 0.018

5.562 ± 0.03

2.905 ± 0.024

10.107 ± 0.044

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.881 ± 0.017

2.611 ± 0.019

5.219 ± 0.025

3.191 ± 0.021

7.031 ± 0.042

5.363 ± 0.026

5.215 ± 0.025

6.875 ± 0.029

1.428 ± 0.014

2.144 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski