Macaca fuscata rhadinovirus

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Peploviricota; Herviviricetes; Herpesvirales; Herpesviridae; Gammaherpesvirinae; Rhadinovirus; Macacine gammaherpesvirus 11

Average proteome isoelectric point is 7.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 170 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q53CY4|Q53CY4_9GAMA JM86 OS=Macaca fuscata rhadinovirus OX=272551 GN=JM86 PE=4 SV=1
MM1 pKa = 7.27TGSIVLALALTACLYY16 pKa = 10.97LCLPVCATVTTSSTTGTGTPPVTTTPSAAPSVTPSFYY53 pKa = 10.66DD54 pKa = 3.56YY55 pKa = 11.29DD56 pKa = 4.35CSADD60 pKa = 3.26TYY62 pKa = 11.31QPVLSSFSSIWAVINSVLVAVATFLYY88 pKa = 8.44LTYY91 pKa = 9.62MCFFKK96 pKa = 10.81FVEE99 pKa = 5.05TVAHH103 pKa = 5.99EE104 pKa = 4.0

Molecular weight: 11.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q53CS8|Q53CS8_9GAMA JM142 OS=Macaca fuscata rhadinovirus OX=272551 GN=JM142 PE=4 SV=1
MM1 pKa = 7.66GNPRR5 pKa = 11.84IDD7 pKa = 3.48RR8 pKa = 11.84SHH10 pKa = 6.43SKK12 pKa = 10.58HH13 pKa = 6.65VGFTLFGEE21 pKa = 4.67SPLAGPNVPARR32 pKa = 11.84CTWVLRR38 pKa = 11.84NAKK41 pKa = 10.15LPLPCRR47 pKa = 11.84VPYY50 pKa = 10.06SCSAIFEE57 pKa = 4.35YY58 pKa = 10.14TALHH62 pKa = 6.49GWRR65 pKa = 11.84AVGRR69 pKa = 11.84WCANQKK75 pKa = 10.65LMIHH79 pKa = 6.72LLVLWLHH86 pKa = 6.29NNTMLLILGGCFGLYY101 pKa = 9.38KK102 pKa = 10.47GRR104 pKa = 11.84RR105 pKa = 11.84KK106 pKa = 9.82HH107 pKa = 6.05RR108 pKa = 3.81

Molecular weight: 12.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

170

0

170

45214

80

1966

266.0

29.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.761 ± 0.186

2.579 ± 0.145

4.452 ± 0.149

4.499 ± 0.142

4.401 ± 0.122

6.52 ± 0.236

2.778 ± 0.094

4.735 ± 0.148

3.846 ± 0.17

9.667 ± 0.209

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.203 ± 0.076

4.067 ± 0.129

6.44 ± 0.217

3.468 ± 0.153

6.841 ± 0.232

7.688 ± 0.206

6.586 ± 0.203

7.181 ± 0.196

1.402 ± 0.077

2.882 ± 0.112
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski