Caulobacteraceae bacterium

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; unclassified Caulobacteraceae

Average proteome isoelectric point is 6.47

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4191 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4Q3RUV4|A0A4Q3RUV4_9CAUL Cytochrome c4 (Fragment) OS=Caulobacteraceae bacterium OX=1978230 GN=EON95_18405 PE=4 SV=1
MM1 pKa = 7.53SGGAYY6 pKa = 9.51GQTPAPVFTGFVGPRR21 pKa = 11.84GEE23 pKa = 3.89FAKK26 pKa = 10.57RR27 pKa = 11.84RR28 pKa = 11.84FTRR31 pKa = 11.84SLGLTEE37 pKa = 4.64LCSSRR42 pKa = 11.84VWSAGATSTWCRR54 pKa = 11.84GGLTGLPRR62 pKa = 11.84HH63 pKa = 5.69TEE65 pKa = 4.07GTDD68 pKa = 3.14MPLSVLYY75 pKa = 10.74YY76 pKa = 8.69EE77 pKa = 5.58FPATGTSGDD86 pKa = 3.91DD87 pKa = 3.49FMFGYY92 pKa = 10.88ASGPGTVNTLNGGDD106 pKa = 3.67GDD108 pKa = 4.43DD109 pKa = 5.49FIMGDD114 pKa = 3.51SQNFQIAAVGNNNGSMATAQGLGDD138 pKa = 3.68SSLWSTQNNPLIADD152 pKa = 3.74PLIPYY157 pKa = 8.31TYY159 pKa = 9.76IVVEE163 pKa = 4.18ATTGQAEE170 pKa = 4.6YY171 pKa = 10.25FGTPMTAGQTITVDD185 pKa = 2.79IDD187 pKa = 3.62FGNGSPIGTGGNVDD201 pKa = 4.64LYY203 pKa = 11.71VEE205 pKa = 4.39ILDD208 pKa = 4.1SNGTVVAFSDD218 pKa = 4.81DD219 pKa = 3.32SAATDD224 pKa = 3.42GGLGSFSGLDD234 pKa = 3.31PYY236 pKa = 11.01LTFTAATSGSYY247 pKa = 10.01YY248 pKa = 9.99IRR250 pKa = 11.84VRR252 pKa = 11.84PLGEE256 pKa = 4.1TTFSASSTFILNVSMTGHH274 pKa = 7.17AVNATPIPAGADD286 pKa = 3.34TLSGGNGDD294 pKa = 4.63DD295 pKa = 5.53LIVGQDD301 pKa = 3.63GNDD304 pKa = 3.39ILHH307 pKa = 6.85GGSGMDD313 pKa = 3.82ILNGGDD319 pKa = 4.24GNDD322 pKa = 3.87TLDD325 pKa = 4.02GGTGGDD331 pKa = 4.04TLNGGAGDD339 pKa = 3.97DD340 pKa = 4.14LVWYY344 pKa = 9.99DD345 pKa = 3.82PTNFDD350 pKa = 4.44AADD353 pKa = 3.98GGTGIDD359 pKa = 3.54TLNTTRR365 pKa = 11.84YY366 pKa = 10.16ASNLVYY372 pKa = 10.88NLASGATGFGEE383 pKa = 4.29SLINFEE389 pKa = 4.64NVVTGAGNDD398 pKa = 3.8TIYY401 pKa = 10.93GSSVANRR408 pKa = 11.84IVTGGGNDD416 pKa = 3.47LVLGGDD422 pKa = 3.76GDD424 pKa = 4.56DD425 pKa = 4.52VISGGDD431 pKa = 3.7GKK433 pKa = 10.79DD434 pKa = 3.24EE435 pKa = 5.42LYY437 pKa = 11.12GQGGNDD443 pKa = 3.35TLADD447 pKa = 3.71GGGVVAEE454 pKa = 4.42TLLGGIGDD462 pKa = 3.85DD463 pKa = 3.75TYY465 pKa = 10.89IVSFRR470 pKa = 11.84EE471 pKa = 3.91SSTIEE476 pKa = 3.94YY477 pKa = 10.27ANEE480 pKa = 4.75GIDD483 pKa = 3.61TVLTTFSIFALQNNVEE499 pKa = 4.32NLTLTDD505 pKa = 3.82NGTHH509 pKa = 6.39GAGVGNALNNVITGGNGKK527 pKa = 9.89DD528 pKa = 3.52DD529 pKa = 4.01LFGRR533 pKa = 11.84DD534 pKa = 4.12GDD536 pKa = 4.12DD537 pKa = 3.48TLDD540 pKa = 4.04GNTGAANTLLGQLGNDD556 pKa = 3.53TYY558 pKa = 11.23LVRR561 pKa = 11.84VAGDD565 pKa = 3.56SVVEE569 pKa = 4.11VAGQGTDD576 pKa = 3.06TVRR579 pKa = 11.84AFVSAHH585 pKa = 4.7TLAANVEE592 pKa = 4.03NLIYY596 pKa = 10.73AGAGTFIGVGNSGGNAIYY614 pKa = 10.42GGAQADD620 pKa = 4.4DD621 pKa = 4.3LNGMGGDD628 pKa = 3.87DD629 pKa = 4.66VIIGGAGSDD638 pKa = 4.37FIQGGSGGDD647 pKa = 3.12QFRR650 pKa = 11.84YY651 pKa = 9.11MGGEE655 pKa = 3.71TGYY658 pKa = 11.15DD659 pKa = 3.37RR660 pKa = 11.84IIDD663 pKa = 3.98FVSGADD669 pKa = 3.23KK670 pKa = 11.5VMLNDD675 pKa = 4.75AFWTQTGTVDD685 pKa = 4.3FAQGAGAVATTGNSTFIHH703 pKa = 5.42NTSNGMVYY711 pKa = 10.53FDD713 pKa = 5.48LDD715 pKa = 3.75GNGAGLAVALCQLNVGQTLTASDD738 pKa = 3.97FGFFF742 pKa = 4.29

Molecular weight: 75.26 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4Q3S9T9|A0A4Q3S9T9_9CAUL 10 kDa chaperonin OS=Caulobacteraceae bacterium OX=1978230 GN=groS PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.56RR3 pKa = 11.84TFQPSRR9 pKa = 11.84LVRR12 pKa = 11.84ARR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 5.3GYY18 pKa = 7.96RR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 9.84NGQKK29 pKa = 9.53IVARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.14GRR39 pKa = 11.84KK40 pKa = 9.04KK41 pKa = 9.67LTAA44 pKa = 4.2

Molecular weight: 5.21 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4191

0

4191

1190268

25

2727

284.0

30.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.781 ± 0.058

0.764 ± 0.011

6.016 ± 0.041

5.359 ± 0.038

3.508 ± 0.024

9.556 ± 0.055

1.735 ± 0.018

4.465 ± 0.028

3.045 ± 0.035

10.129 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.34 ± 0.02

2.359 ± 0.031

5.535 ± 0.035

3.032 ± 0.02

7.063 ± 0.049

4.963 ± 0.029

5.31 ± 0.043

7.422 ± 0.033

1.489 ± 0.017

2.128 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski