Amino acid dipepetide frequency for Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) (Planctomyces limnophilus)

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10^-3.

For more information see sequence space article on Wikipedia.

	Ala	Cys	Asp	Glu	Phe	Gly	His	Ile	Lys	Leu	Met	Asn	Pro	Gln	Arg	Ser	Thr	Val	Trp	Tyr	Xaa
Ala	10.853AlaAla: 10.853 ± 0.11	1.119AlaCys: 1.119 ± 0.03	5.119AlaAsp: 5.119 ± 0.066	6.183AlaGlu: 6.183 ± 0.083	3.124AlaPhe: 3.124 ± 0.047	7.986AlaGly: 7.986 ± 0.121	1.822AlaHis: 1.822 ± 0.038	5.572AlaIle: 5.572 ± 0.063	3.8AlaLys: 3.8 ± 0.066	9.01AlaLeu: 9.01 ± 0.093	2.515AlaMet: 2.515 ± 0.047	3.118AlaAsn: 3.118 ± 0.058	4.494AlaPro: 4.494 ± 0.074	3.934AlaGln: 3.934 ± 0.058	5.869AlaArg: 5.869 ± 0.08	6.227AlaSer: 6.227 ± 0.078	5.85AlaThr: 5.85 ± 0.072	6.248AlaVal: 6.248 ± 0.069	1.471AlaTrp: 1.471 ± 0.032	2.002AlaTyr: 2.002 ± 0.04	0.0AlaXaa: 0.0 ± 0.0
Cys	0.868CysAla: 0.868 ± 0.033	0.205CysCys: 0.205 ± 0.013	0.621CysAsp: 0.621 ± 0.023	0.732CysGlu: 0.732 ± 0.022	0.417CysPhe: 0.417 ± 0.017	1.079CysGly: 1.079 ± 0.026	0.415CysHis: 0.415 ± 0.021	0.455CysIle: 0.455 ± 0.017	0.302CysLys: 0.302 ± 0.014	1.243CysLeu: 1.243 ± 0.034	0.198CysMet: 0.198 ± 0.011	0.271CysAsn: 0.271 ± 0.013	0.626CysPro: 0.626 ± 0.021	0.523CysGln: 0.523 ± 0.019	0.805CysArg: 0.805 ± 0.024	0.731CysSer: 0.731 ± 0.026	0.542CysThr: 0.542 ± 0.018	0.753CysVal: 0.753 ± 0.026	0.194CysTrp: 0.194 ± 0.011	0.281CysTyr: 0.281 ± 0.015	0.0CysXaa: 0.0 ± 0.0
Asp	4.533AspAla: 4.533 ± 0.072	0.5AspCys: 0.5 ± 0.019	2.931AspAsp: 2.931 ± 0.053	3.564AspGlu: 3.564 ± 0.057	2.186AspPhe: 2.186 ± 0.043	4.121AspGly: 4.121 ± 0.056	1.303AspHis: 1.303 ± 0.036	2.177AspIle: 2.177 ± 0.049	1.48AspLys: 1.48 ± 0.035	5.8AspLeu: 5.8 ± 0.077	0.804AspMet: 0.804 ± 0.023	1.286AspAsn: 1.286 ± 0.033	3.17AspPro: 3.17 ± 0.048	2.533AspGln: 2.533 ± 0.042	3.705AspArg: 3.705 ± 0.062	2.962AspSer: 2.962 ± 0.056	1.955AspThr: 1.955 ± 0.039	3.582AspVal: 3.582 ± 0.073	0.994AspTrp: 0.994 ± 0.027	1.327AspTyr: 1.327 ± 0.033	0.0AspXaa: 0.0 ± 0.0
Glu	5.98GluAla: 5.98 ± 0.082	0.537GluCys: 0.537 ± 0.019	2.52GluAsp: 2.52 ± 0.05	3.739GluGlu: 3.739 ± 0.059	2.563GluPhe: 2.563 ± 0.039	3.775GluGly: 3.775 ± 0.056	1.317GluHis: 1.317 ± 0.032	3.863GluIle: 3.863 ± 0.055	3.13GluLys: 3.13 ± 0.062	7.205GluLeu: 7.205 ± 0.089	1.561GluMet: 1.561 ± 0.031	2.115GluAsn: 2.115 ± 0.037	2.853GluPro: 2.853 ± 0.05	3.015GluGln: 3.015 ± 0.046	3.906GluArg: 3.906 ± 0.059	4.018GluSer: 4.018 ± 0.057	3.709GluThr: 3.709 ± 0.049	4.218GluVal: 4.218 ± 0.052	0.972GluTrp: 0.972 ± 0.027	1.397GluTyr: 1.397 ± 0.034	0.0GluXaa: 0.0 ± 0.0
Phe	3.424PheAla: 3.424 ± 0.044	0.54PheCys: 0.54 ± 0.019	2.467PheAsp: 2.467 ± 0.041	2.375PheGlu: 2.375 ± 0.044	1.472PhePhe: 1.472 ± 0.036	3.029PheGly: 3.029 ± 0.05	0.836PheHis: 0.836 ± 0.023	1.572PheIle: 1.572 ± 0.034	1.035PheLys: 1.035 ± 0.024	3.566PheLeu: 3.566 ± 0.06	0.694PheMet: 0.694 ± 0.023	1.051PheAsn: 1.051 ± 0.028	2.014PhePro: 2.014 ± 0.039	1.532PheGln: 1.532 ± 0.034	2.488PheArg: 2.488 ± 0.044	2.65PheSer: 2.65 ± 0.043	1.967PheThr: 1.967 ± 0.035	2.795PheVal: 2.795 ± 0.049	0.647PheTrp: 0.647 ± 0.022	0.852PheTyr: 0.852 ± 0.024	0.0PheXaa: 0.0 ± 0.0
Gly	5.696GlyAla: 5.696 ± 0.08	0.967GlyCys: 0.967 ± 0.027	3.615GlyAsp: 3.615 ± 0.08	4.54GlyGlu: 4.54 ± 0.066	3.056GlyPhe: 3.056 ± 0.048	5.864GlyGly: 5.864 ± 0.105	1.712GlyHis: 1.712 ± 0.034	4.026GlyIle: 4.026 ± 0.057	3.649GlyLys: 3.649 ± 0.062	7.446GlyLeu: 7.446 ± 0.081	1.927GlyMet: 1.927 ± 0.039	2.577GlyAsn: 2.577 ± 0.079	3.036GlyPro: 3.036 ± 0.057	3.371GlyGln: 3.371 ± 0.053	4.593GlyArg: 4.593 ± 0.068	4.985GlySer: 4.985 ± 0.082	4.438GlyThr: 4.438 ± 0.086	5.046GlyVal: 5.046 ± 0.062	1.457GlyTrp: 1.457 ± 0.035	2.086GlyTyr: 2.086 ± 0.042	0.0GlyXaa: 0.0 ± 0.0
His	2.015HisAla: 2.015 ± 0.04	0.295HisCys: 0.295 ± 0.015	1.242HisAsp: 1.242 ± 0.031	1.388HisGlu: 1.388 ± 0.035	0.876HisPhe: 0.876 ± 0.023	1.747HisGly: 1.747 ± 0.036	0.716HisHis: 0.716 ± 0.026	0.883HisIle: 0.883 ± 0.023	0.607HisLys: 0.607 ± 0.02	2.392HisLeu: 2.392 ± 0.035	0.361HisMet: 0.361 ± 0.015	0.603HisAsn: 0.603 ± 0.022	1.572HisPro: 1.572 ± 0.038	1.091HisGln: 1.091 ± 0.028	1.661HisArg: 1.661 ± 0.037	1.348HisSer: 1.348 ± 0.037	0.996HisThr: 0.996 ± 0.024	1.457HisVal: 1.457 ± 0.033	0.438HisTrp: 0.438 ± 0.018	0.539HisTyr: 0.539 ± 0.022	0.0HisXaa: 0.0 ± 0.0
Ile	5.166IleAla: 5.166 ± 0.058	0.752IleCys: 0.752 ± 0.023	3.542IleAsp: 3.542 ± 0.06	4.018IleGlu: 4.018 ± 0.052	1.719IlePhe: 1.719 ± 0.036	3.71IleGly: 3.71 ± 0.051	1.265IleHis: 1.265 ± 0.026	2.133IleIle: 2.133 ± 0.038	1.496IleLys: 1.496 ± 0.033	4.978IleLeu: 4.978 ± 0.061	0.791IleMet: 0.791 ± 0.02	1.55IleAsn: 1.55 ± 0.039	3.135IlePro: 3.135 ± 0.045	2.058IleGln: 2.058 ± 0.036	3.561IleArg: 3.561 ± 0.047	3.748IleSer: 3.748 ± 0.055	2.824IleThr: 2.824 ± 0.085	3.926IleVal: 3.926 ± 0.06	0.669IleTrp: 0.669 ± 0.022	1.257IleTyr: 1.257 ± 0.032	0.0IleXaa: 0.0 ± 0.0
Lys	3.81LysAla: 3.81 ± 0.061	0.345LysCys: 0.345 ± 0.016	1.903LysAsp: 1.903 ± 0.037	2.263LysGlu: 2.263 ± 0.046	1.289LysPhe: 1.289 ± 0.031	2.34LysGly: 2.34 ± 0.042	0.794LysHis: 0.794 ± 0.024	2.111LysIle: 2.111 ± 0.041	1.85LysLys: 1.85 ± 0.05	4.232LysLeu: 4.232 ± 0.07	0.896LysMet: 0.896 ± 0.029	1.301LysAsn: 1.301 ± 0.032	2.588LysPro: 2.588 ± 0.048	1.595LysGln: 1.595 ± 0.039	2.059LysArg: 2.059 ± 0.043	2.919LysSer: 2.919 ± 0.051	2.546LysThr: 2.546 ± 0.051	2.683LysVal: 2.683 ± 0.047	0.509LysTrp: 0.509 ± 0.019	0.963LysTyr: 0.963 ± 0.027	0.0LysXaa: 0.0 ± 0.0
Leu	11.583LeuAla: 11.583 ± 0.117	1.192LeuCys: 1.192 ± 0.03	5.238LeuAsp: 5.238 ± 0.072	6.297LeuGlu: 6.297 ± 0.085	3.581LeuPhe: 3.581 ± 0.052	7.225LeuGly: 7.225 ± 0.076	2.002LeuHis: 2.002 ± 0.039	5.416LeuIle: 5.416 ± 0.067	4.945LeuLys: 4.945 ± 0.069	10.884LeuLeu: 10.884 ± 0.126	2.325LeuMet: 2.325 ± 0.044	3.076LeuAsn: 3.076 ± 0.053	6.348LeuPro: 6.348 ± 0.081	4.196LeuGln: 4.196 ± 0.062	6.192LeuArg: 6.192 ± 0.076	7.201LeuSer: 7.201 ± 0.083	5.952LeuThr: 5.952 ± 0.089	7.004LeuVal: 7.004 ± 0.078	1.582LeuTrp: 1.582 ± 0.045	1.994LeuTyr: 1.994 ± 0.037	0.0LeuXaa: 0.0 ± 0.0
Met	2.544MetAla: 2.544 ± 0.046	0.212MetCys: 0.212 ± 0.012	0.87MetAsp: 0.87 ± 0.024	1.14MetGlu: 1.14 ± 0.029	0.755MetPhe: 0.755 ± 0.024	1.529MetGly: 1.529 ± 0.037	0.464MetHis: 0.464 ± 0.018	1.329MetIle: 1.329 ± 0.029	0.939MetLys: 0.939 ± 0.026	2.291MetLeu: 2.291 ± 0.043	0.514MetMet: 0.514 ± 0.019	0.852MetAsn: 0.852 ± 0.023	1.284MetPro: 1.284 ± 0.027	0.896MetGln: 0.896 ± 0.023	1.19MetArg: 1.19 ± 0.03	1.609MetSer: 1.609 ± 0.035	1.624MetThr: 1.624 ± 0.032	1.445MetVal: 1.445 ± 0.036	0.233MetTrp: 0.233 ± 0.012	0.365MetTyr: 0.365 ± 0.015	0.0MetXaa: 0.0 ± 0.0
Asn	2.687AsnAla: 2.687 ± 0.05	0.376AsnCys: 0.376 ± 0.017	1.658AsnAsp: 1.658 ± 0.037	1.762AsnGlu: 1.762 ± 0.036	1.17AsnPhe: 1.17 ± 0.03	2.393AsnGly: 2.393 ± 0.06	0.75AsnHis: 0.75 ± 0.022	1.368AsnIle: 1.368 ± 0.035	0.826AsnLys: 0.826 ± 0.026	3.139AsnLeu: 3.139 ± 0.047	0.592AsnMet: 0.592 ± 0.021	1.007AsnAsn: 1.007 ± 0.038	2.25AsnPro: 2.25 ± 0.049	1.41AsnGln: 1.41 ± 0.033	2.139AsnArg: 2.139 ± 0.039	2.398AsnSer: 2.398 ± 0.055	1.629AsnThr: 1.629 ± 0.047	2.074AsnVal: 2.074 ± 0.049	0.612AsnTrp: 0.612 ± 0.023	0.85AsnTyr: 0.85 ± 0.026	0.0AsnXaa: 0.0 ± 0.0
Pro	6.726ProAla: 6.726 ± 0.096	0.47ProCys: 0.47 ± 0.02	2.974ProAsp: 2.974 ± 0.051	4.346ProGlu: 4.346 ± 0.064	1.923ProPhe: 1.923 ± 0.032	4.292ProGly: 4.292 ± 0.06	1.288ProHis: 1.288 ± 0.032	2.413ProIle: 2.413 ± 0.042	1.913ProLys: 1.913 ± 0.044	5.323ProLeu: 5.323 ± 0.073	1.162ProMet: 1.162 ± 0.03	1.528ProAsn: 1.528 ± 0.036	3.231ProPro: 3.231 ± 0.066	2.73ProGln: 2.73 ± 0.052	2.933ProArg: 2.933 ± 0.059	3.469ProSer: 3.469 ± 0.053	2.998ProThr: 2.998 ± 0.052	4.476ProVal: 4.476 ± 0.067	0.89ProTrp: 0.89 ± 0.027	1.166ProTyr: 1.166 ± 0.03	0.0ProXaa: 0.0 ± 0.0
Gln	4.471GlnAla: 4.471 ± 0.064	0.386GlnCys: 0.386 ± 0.016	1.49GlnAsp: 1.49 ± 0.032	2.454GlnGlu: 2.454 ± 0.052	1.745GlnPhe: 1.745 ± 0.035	2.875GlnGly: 2.875 ± 0.04	0.941GlnHis: 0.941 ± 0.028	2.614GlnIle: 2.614 ± 0.043	2.051GlnLys: 2.051 ± 0.042	5.183GlnLeu: 5.183 ± 0.074	1.024GlnMet: 1.024 ± 0.024	1.394GlnAsn: 1.394 ± 0.032	2.869GlnPro: 2.869 ± 0.053	2.532GlnGln: 2.532 ± 0.057	2.882GlnArg: 2.882 ± 0.045	2.897GlnSer: 2.897 ± 0.04	2.542GlnThr: 2.542 ± 0.046	2.986GlnVal: 2.986 ± 0.042	0.759GlnTrp: 0.759 ± 0.024	0.873GlnTyr: 0.873 ± 0.026	0.0GlnXaa: 0.0 ± 0.0
Arg	4.612ArgAla: 4.612 ± 0.054	0.667ArgCys: 0.667 ± 0.023	3.122ArgAsp: 3.122 ± 0.047	4.279ArgGlu: 4.279 ± 0.066	2.691ArgPhe: 2.691 ± 0.043	3.887ArgGly: 3.887 ± 0.057	1.532ArgHis: 1.532 ± 0.034	3.502ArgIle: 3.502 ± 0.051	2.765ArgLys: 2.765 ± 0.044	7.298ArgLeu: 7.298 ± 0.084	1.633ArgMet: 1.633 ± 0.039	2.062ArgAsn: 2.062 ± 0.041	3.227ArgPro: 3.227 ± 0.065	3.476ArgGln: 3.476 ± 0.058	4.266ArgArg: 4.266 ± 0.071	3.973ArgSer: 3.973 ± 0.063	3.336ArgThr: 3.336 ± 0.055	4.146ArgVal: 4.146 ± 0.061	1.199ArgTrp: 1.199 ± 0.035	1.674ArgTyr: 1.674 ± 0.032	0.0ArgXaa: 0.0 ± 0.0
Ser	5.991SerAla: 5.991 ± 0.056	0.657SerCys: 0.657 ± 0.024	3.034SerAsp: 3.034 ± 0.058	3.842SerGlu: 3.842 ± 0.058	2.409SerPhe: 2.409 ± 0.042	5.496SerGly: 5.496 ± 0.074	1.565SerHis: 1.565 ± 0.034	3.568SerIle: 3.568 ± 0.057	2.4SerLys: 2.4 ± 0.043	7.122SerLeu: 7.122 ± 0.078	1.589SerMet: 1.589 ± 0.033	2.025SerAsn: 2.025 ± 0.043	4.13SerPro: 4.13 ± 0.069	3.371SerGln: 3.371 ± 0.052	4.714SerArg: 4.714 ± 0.053	5.434SerSer: 5.434 ± 0.084	4.172SerThr: 4.172 ± 0.067	4.011SerVal: 4.011 ± 0.058	1.025SerTrp: 1.025 ± 0.025	1.332SerTyr: 1.332 ± 0.029	0.0SerXaa: 0.0 ± 0.0
Thr	5.385ThrAla: 5.385 ± 0.09	0.657ThrCys: 0.657 ± 0.027	2.732ThrAsp: 2.732 ± 0.045	2.895ThrGlu: 2.895 ± 0.049	2.091ThrPhe: 2.091 ± 0.039	5.102ThrGly: 5.102 ± 0.107	1.169ThrHis: 1.169 ± 0.028	3.468ThrIle: 3.468 ± 0.08	1.855ThrLys: 1.855 ± 0.038	5.601ThrLeu: 5.601 ± 0.074	1.113ThrMet: 1.113 ± 0.027	1.792ThrAsn: 1.792 ± 0.047	3.864ThrPro: 3.864 ± 0.057	2.117ThrGln: 2.117 ± 0.042	3.261ThrArg: 3.261 ± 0.049	4.228ThrSer: 4.228 ± 0.079	3.903ThrThr: 3.903 ± 0.136	3.696ThrVal: 3.696 ± 0.073	0.858ThrTrp: 0.858 ± 0.021	1.291ThrTyr: 1.291 ± 0.034	0.0ThrXaa: 0.0 ± 0.0
Val	6.763ValAla: 6.763 ± 0.077	0.874ValCys: 0.874 ± 0.029	3.834ValAsp: 3.834 ± 0.055	4.36ValGlu: 4.36 ± 0.052	2.362ValPhe: 2.362 ± 0.044	4.662ValGly: 4.662 ± 0.072	1.324ValHis: 1.324 ± 0.032	4.072ValIle: 4.072 ± 0.056	2.465ValLys: 2.465 ± 0.048	6.937ValLeu: 6.937 ± 0.073	1.57ValMet: 1.57 ± 0.031	2.148ValAsn: 2.148 ± 0.053	3.522ValPro: 3.522 ± 0.057	2.516ValGln: 2.516 ± 0.046	4.2ValArg: 4.2 ± 0.055	4.509ValSer: 4.509 ± 0.056	4.219ValThr: 4.219 ± 0.092	5.605ValVal: 5.605 ± 0.072	1.008ValTrp: 1.008 ± 0.025	1.542ValTyr: 1.542 ± 0.036	0.0ValXaa: 0.0 ± 0.0
Trp	1.175TrpAla: 1.175 ± 0.029	0.211TrpCys: 0.211 ± 0.013	0.669TrpAsp: 0.669 ± 0.023	0.836TrpGlu: 0.836 ± 0.026	0.594TrpPhe: 0.594 ± 0.021	1.058TrpGly: 1.058 ± 0.027	0.418TrpHis: 0.418 ± 0.016	0.912TrpIle: 0.912 ± 0.023	0.844TrpLys: 0.844 ± 0.024	2.058TrpLeu: 2.058 ± 0.047	0.447TrpMet: 0.447 ± 0.02	0.697TrpAsn: 0.697 ± 0.022	0.877TrpPro: 0.877 ± 0.029	0.947TrpGln: 0.947 ± 0.029	0.999TrpArg: 0.999 ± 0.027	1.111TrpSer: 1.111 ± 0.032	0.783TrpThr: 0.783 ± 0.021	0.897TrpVal: 0.897 ± 0.024	0.35TrpTrp: 0.35 ± 0.015	0.384TrpTyr: 0.384 ± 0.015	0.0TrpXaa: 0.0 ± 0.0
Tyr	2.033TyrAla: 2.033 ± 0.037	0.301TyrCys: 0.301 ± 0.013	1.333TyrAsp: 1.333 ± 0.052	1.38TyrGlu: 1.38 ± 0.033	0.98TyrPhe: 0.98 ± 0.029	1.916TyrGly: 1.916 ± 0.039	0.594TyrHis: 0.594 ± 0.017	0.842TyrIle: 0.842 ± 0.023	0.646TyrLys: 0.646 ± 0.021	2.527TyrLeu: 2.527 ± 0.041	0.366TyrMet: 0.366 ± 0.017	0.64TyrAsn: 0.64 ± 0.025	1.162TyrPro: 1.162 ± 0.031	1.127TyrGln: 1.127 ± 0.028	1.924TyrArg: 1.924 ± 0.037	1.47TyrSer: 1.47 ± 0.035	1.093TyrThr: 1.093 ± 0.03	1.446TyrVal: 1.446 ± 0.032	0.396TyrTrp: 0.396 ± 0.017	0.628TyrTyr: 0.628 ± 0.021	0.0TyrXaa: 0.0 ± 0.0
Xaa	0.0XaaAla: 0.0 ± 0.0	0.0XaaCys: 0.0 ± 0.0	0.0XaaAsp: 0.0 ± 0.0	0.0XaaGlu: 0.0 ± 0.0	0.0XaaPhe: 0.0 ± 0.0	0.0XaaGly: 0.0 ± 0.0	0.0XaaHis: 0.0 ± 0.0	0.0XaaIle: 0.0 ± 0.0	0.0XaaLys: 0.0 ± 0.0	0.0XaaLeu: 0.0 ± 0.0	0.0XaaMet: 0.0 ± 0.0	0.0XaaAsn: 0.0 ± 0.0	0.0XaaPro: 0.0 ± 0.0	0.0XaaGln: 0.0 ± 0.0	0.0XaaArg: 0.0 ± 0.0	0.0XaaSer: 0.0 ± 0.0	0.0XaaThr: 0.0 ± 0.0	0.0XaaVal: 0.0 ± 0.0	0.0XaaTrp: 0.0 ± 0.0	0.0XaaTyr: 0.0 ± 0.0	0.0XaaXaa: 0.0 ± 0.0

Statistics based on 4258 proteins (1533192 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944

Contact: Lukasz P. Kozlowski

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