Tupaia paramyxovirus (TPMV)

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Orthoparamyxovirinae; Narmovirus; Tupaia narmovirus

Average proteome isoelectric point is 6.39

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>sp|Q9WS40|NCAP_TPMV Nucleoprotein OS=Tupaia paramyxovirus OX=92129 GN=N PE=3 SV=1
MM1 pKa = 7.91ADD3 pKa = 4.19LFSKK7 pKa = 11.11VNDD10 pKa = 3.71FQKK13 pKa = 10.86YY14 pKa = 5.08RR15 pKa = 11.84TNLGRR20 pKa = 11.84QGGLTVKK27 pKa = 10.5LVGVRR32 pKa = 11.84STVVVLVPSTKK43 pKa = 9.96DD44 pKa = 2.9HH45 pKa = 6.45RR46 pKa = 11.84LRR48 pKa = 11.84WKK50 pKa = 10.66LIRR53 pKa = 11.84LLTLAVYY60 pKa = 10.55NDD62 pKa = 4.24SLPDD66 pKa = 4.1SISIGALLSLLAISFEE82 pKa = 4.03QPAAVIRR89 pKa = 11.84GLLSDD94 pKa = 4.94PDD96 pKa = 4.93LEE98 pKa = 4.34VQMIEE103 pKa = 5.1VSLDD107 pKa = 3.31DD108 pKa = 3.34QGEE111 pKa = 3.97IRR113 pKa = 11.84FAARR117 pKa = 11.84GDD119 pKa = 3.07ILTRR123 pKa = 11.84YY124 pKa = 9.1KK125 pKa = 10.57DD126 pKa = 3.34AYY128 pKa = 9.96FEE130 pKa = 4.75KK131 pKa = 10.51IRR133 pKa = 11.84DD134 pKa = 4.01FPNPDD139 pKa = 3.32DD140 pKa = 4.77DD141 pKa = 5.05LAIFEE146 pKa = 4.77DD147 pKa = 4.9PEE149 pKa = 5.54LGDD152 pKa = 4.02YY153 pKa = 11.32SDD155 pKa = 3.68ITQDD159 pKa = 3.41EE160 pKa = 4.64YY161 pKa = 11.62QAMITTITIQLWILLTKK178 pKa = 10.58AVTAPDD184 pKa = 3.73TAHH187 pKa = 7.47DD188 pKa = 3.81SEE190 pKa = 3.96QRR192 pKa = 11.84RR193 pKa = 11.84FIKK196 pKa = 10.49YY197 pKa = 8.08LQQRR201 pKa = 11.84KK202 pKa = 9.35AYY204 pKa = 9.8AAFKK208 pKa = 9.08FTTIFTEE215 pKa = 4.14RR216 pKa = 11.84VRR218 pKa = 11.84RR219 pKa = 11.84KK220 pKa = 9.03IAQSLSIRR228 pKa = 11.84KK229 pKa = 9.04FMVSIMLEE237 pKa = 4.04VRR239 pKa = 11.84KK240 pKa = 10.47SGSAKK245 pKa = 10.18GRR247 pKa = 11.84ISEE250 pKa = 4.77CIADD254 pKa = 3.43VSAYY258 pKa = 9.62IEE260 pKa = 4.06EE261 pKa = 4.78AGLSGFILTLKK272 pKa = 10.32YY273 pKa = 10.77GIGTRR278 pKa = 11.84FPVLALNAFQSDD290 pKa = 3.5LSVIRR295 pKa = 11.84NLIDD299 pKa = 3.71LYY301 pKa = 11.45KK302 pKa = 11.02SMGTIAPFMVLIEE315 pKa = 5.1DD316 pKa = 3.8ATQVKK321 pKa = 8.69FAPGNYY327 pKa = 9.22SLLWSFAMGVGTALDD342 pKa = 3.32HH343 pKa = 7.49AMNNLNINRR352 pKa = 11.84DD353 pKa = 3.86YY354 pKa = 11.57LEE356 pKa = 4.02PSYY359 pKa = 10.88FRR361 pKa = 11.84LGQEE365 pKa = 4.03VVRR368 pKa = 11.84LSEE371 pKa = 4.32STVDD375 pKa = 3.21RR376 pKa = 11.84SMAQEE381 pKa = 4.22LGIDD385 pKa = 3.79PTSEE389 pKa = 4.0DD390 pKa = 3.79LIMRR394 pKa = 11.84AVQAAGVGSRR404 pKa = 11.84DD405 pKa = 2.95PDD407 pKa = 3.33AARR410 pKa = 11.84RR411 pKa = 11.84TGRR414 pKa = 11.84FQVADD419 pKa = 3.52IQIDD423 pKa = 3.72EE424 pKa = 4.84GPVDD428 pKa = 4.22LATEE432 pKa = 4.75AEE434 pKa = 4.26DD435 pKa = 3.77QTTKK439 pKa = 11.15DD440 pKa = 2.97NEE442 pKa = 4.02QRR444 pKa = 11.84IKK446 pKa = 11.19VPDD449 pKa = 3.66PRR451 pKa = 11.84GSIGQSNAQFQPPKK465 pKa = 8.08PQLRR469 pKa = 11.84GRR471 pKa = 11.84VMPPEE476 pKa = 4.63RR477 pKa = 11.84KK478 pKa = 8.42PTDD481 pKa = 3.46QQKK484 pKa = 10.15NLQDD488 pKa = 3.39QRR490 pKa = 11.84PRR492 pKa = 11.84PSATPRR498 pKa = 11.84RR499 pKa = 11.84LTKK502 pKa = 10.53DD503 pKa = 2.92AEE505 pKa = 4.49DD506 pKa = 5.15NIDD509 pKa = 3.87QLFAQYY515 pKa = 10.87DD516 pKa = 3.85SGVAAPEE523 pKa = 4.09DD524 pKa = 3.86VTLVTSDD531 pKa = 3.24STSPARR537 pKa = 11.84SSGTGSDD544 pKa = 3.15MDD546 pKa = 6.19LINQSPP552 pKa = 3.25

Molecular weight: 61.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>sp|Q9QM81|V_TPMV Non-structural protein V OS=Tupaia paramyxovirus OX=92129 GN=P/V PE=3 SV=1
MM1 pKa = 7.13YY2 pKa = 9.38PSAPRR7 pKa = 11.84IDD9 pKa = 3.82EE10 pKa = 4.4APVVDD15 pKa = 5.14CEE17 pKa = 4.56YY18 pKa = 11.14EE19 pKa = 4.4FIPTTWLEE27 pKa = 3.88KK28 pKa = 10.7GYY30 pKa = 10.47LSAMKK35 pKa = 10.5VEE37 pKa = 4.53SDD39 pKa = 3.66HH40 pKa = 6.38NGKK43 pKa = 9.97IIPSVRR49 pKa = 11.84VVNPGWGEE57 pKa = 4.13RR58 pKa = 11.84KK59 pKa = 8.13TSGYY63 pKa = 9.47MYY65 pKa = 10.58LIMHH69 pKa = 7.25GIVEE73 pKa = 4.72DD74 pKa = 4.01VPKK77 pKa = 11.09DD78 pKa = 3.05GDD80 pKa = 3.58TEE82 pKa = 3.95QRR84 pKa = 11.84YY85 pKa = 9.69SGKK88 pKa = 8.96TYY90 pKa = 10.51AAFPLGVGKK99 pKa = 10.96SNATPDD105 pKa = 4.32DD106 pKa = 4.72LLTSMNKK113 pKa = 9.83LQITVRR119 pKa = 11.84RR120 pKa = 11.84TAGAGEE126 pKa = 4.21RR127 pKa = 11.84IVFGNNAPLGALFPWRR143 pKa = 11.84RR144 pKa = 11.84VLDD147 pKa = 4.58FGAVFTAYY155 pKa = 9.32KK156 pKa = 9.95VCLSVEE162 pKa = 4.58SISLFTPQRR171 pKa = 11.84FRR173 pKa = 11.84PLFLTVTLLTDD184 pKa = 3.28NGLYY188 pKa = 10.15KK189 pKa = 10.67APSLFADD196 pKa = 5.05FRR198 pKa = 11.84ASKK201 pKa = 10.5AVSFNLLARR210 pKa = 11.84LTVNNKK216 pKa = 9.56SGKK219 pKa = 9.93DD220 pKa = 3.68YY221 pKa = 11.06LATAPASDD229 pKa = 3.68TKK231 pKa = 10.87QVVSFMVHH239 pKa = 5.6IGNFVRR245 pKa = 11.84KK246 pKa = 10.13GGDD249 pKa = 3.19VYY251 pKa = 11.67SNSYY255 pKa = 9.47CKK257 pKa = 10.49KK258 pKa = 10.39KK259 pKa = 9.74IDD261 pKa = 4.57RR262 pKa = 11.84MDD264 pKa = 3.34LQFALGAVGGLSFHH278 pKa = 6.86IKK280 pKa = 10.3INGKK284 pKa = 7.38MSKK287 pKa = 8.46TLMTQLGFHH296 pKa = 7.11RR297 pKa = 11.84NLCYY301 pKa = 10.62SIMDD305 pKa = 4.33INPDD309 pKa = 3.55LNKK312 pKa = 10.56KK313 pKa = 8.53IWNSSCRR320 pKa = 11.84ITSVAAILQPSVSKK334 pKa = 10.75DD335 pKa = 3.11FKK337 pKa = 10.37IYY339 pKa = 10.54HH340 pKa = 6.85DD341 pKa = 3.96VFIDD345 pKa = 3.53NTGKK349 pKa = 10.5IMGG352 pKa = 4.27

Molecular weight: 39.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

5354

153

2270

669.3

75.13

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.753 ± 0.671

1.886 ± 0.303

5.977 ± 0.394

5.454 ± 0.699

3.044 ± 0.492

5.902 ± 0.508

2.26 ± 0.234

6.911 ± 0.533

5.902 ± 0.344

10.105 ± 0.554

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.409 ± 0.234

5.118 ± 0.46

5.043 ± 0.404

4.053 ± 0.414

4.968 ± 0.485

8.797 ± 0.413

6.22 ± 0.392

4.968 ± 0.366

1.102 ± 0.164

4.128 ± 0.816
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski