Papaya leaf curl betasatellite

Taxonomy: Viruses; Tolecusatellitidae; Betasatellite

Average proteome isoelectric point is 4.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q80MT8|Q80MT8_9VIRU C4 protein OS=Papaya leaf curl betasatellite OX=714640 GN=C4 PE=4 SV=1
MM1 pKa = 7.12TIKK4 pKa = 10.57YY5 pKa = 9.37VNQKK9 pKa = 10.6GLVFVINVTLRR20 pKa = 11.84GDD22 pKa = 3.55EE23 pKa = 4.3SIKK26 pKa = 10.91VYY28 pKa = 10.42IQLTSTRR35 pKa = 11.84SPALVKK41 pKa = 10.5KK42 pKa = 10.62KK43 pKa = 10.51FMLPYY48 pKa = 9.24KK49 pKa = 9.72HH50 pKa = 7.09DD51 pKa = 4.7GIIPPFDD58 pKa = 3.94FNNLEE63 pKa = 3.87EE64 pKa = 4.87GIRR67 pKa = 11.84NILAIMYY74 pKa = 8.94RR75 pKa = 11.84DD76 pKa = 3.33SSFDD80 pKa = 3.25EE81 pKa = 4.62FRR83 pKa = 11.84QEE85 pKa = 5.21DD86 pKa = 3.77MTEE89 pKa = 4.18IIDD92 pKa = 3.54ILMMHH97 pKa = 7.11EE98 pKa = 4.6APVFDD103 pKa = 3.28IQIFDD108 pKa = 3.78EE109 pKa = 4.99YY110 pKa = 11.17GVCTNVSAA118 pKa = 5.1

Molecular weight: 13.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q80MT8|Q80MT8_9VIRU C4 protein OS=Papaya leaf curl betasatellite OX=714640 GN=C4 PE=4 SV=1
MM1 pKa = 7.12TIKK4 pKa = 10.57YY5 pKa = 9.37VNQKK9 pKa = 10.6GLVFVINVTLRR20 pKa = 11.84GDD22 pKa = 3.55EE23 pKa = 4.3SIKK26 pKa = 10.91VYY28 pKa = 10.42IQLTSTRR35 pKa = 11.84SPALVKK41 pKa = 10.5KK42 pKa = 10.62KK43 pKa = 10.51FMLPYY48 pKa = 9.24KK49 pKa = 9.72HH50 pKa = 7.09DD51 pKa = 4.7GIIPPFDD58 pKa = 3.94FNNLEE63 pKa = 3.87EE64 pKa = 4.87GIRR67 pKa = 11.84NILAIMYY74 pKa = 8.94RR75 pKa = 11.84DD76 pKa = 3.33SSFDD80 pKa = 3.25EE81 pKa = 4.62FRR83 pKa = 11.84QEE85 pKa = 5.21DD86 pKa = 3.77MTEE89 pKa = 4.18IIDD92 pKa = 3.54ILMMHH97 pKa = 7.11EE98 pKa = 4.6APVFDD103 pKa = 3.28IQIFDD108 pKa = 3.78EE109 pKa = 4.99YY110 pKa = 11.17GVCTNVSAA118 pKa = 5.1

Molecular weight: 13.69 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

118

118

118

118.0

13.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.39 ± 0.0

0.847 ± 0.0

7.627 ± 0.0

6.78 ± 0.0

6.78 ± 0.0

4.237 ± 0.0

1.695 ± 0.0

11.864 ± 0.0

5.932 ± 0.0

6.78 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

5.085 ± 0.0

5.085 ± 0.0

4.237 ± 0.0

3.39 ± 0.0

4.237 ± 0.0

5.085 ± 0.0

5.085 ± 0.0

7.627 ± 0.0

0.0 ± 0.0

4.237 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski