Solimonas fluminis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Nevskiales; Sinobacteraceae; Solimonas

Average proteome isoelectric point is 6.87

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4276 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S5TK49|A0A2S5TK49_9GAMM Urease subunit gamma OS=Solimonas fluminis OX=2086571 GN=ureA PE=3 SV=1
MM1 pKa = 7.12NRR3 pKa = 11.84VGKK6 pKa = 8.21ATRR9 pKa = 11.84WASALMAVGAAGAMPVAQADD29 pKa = 3.73IEE31 pKa = 4.47LGNGLSVTGFLDD43 pKa = 3.34MSYY46 pKa = 11.26SSVNPDD52 pKa = 2.98SGSSTEE58 pKa = 4.6SVGIDD63 pKa = 3.41QFEE66 pKa = 4.24MDD68 pKa = 4.69FKK70 pKa = 10.74YY71 pKa = 10.52AGSGGVSAQVDD82 pKa = 3.42IEE84 pKa = 4.22YY85 pKa = 11.24GEE87 pKa = 4.76GFDD90 pKa = 5.35GSDD93 pKa = 3.42DD94 pKa = 3.68EE95 pKa = 5.05TFVEE99 pKa = 4.49QAFITKK105 pKa = 10.32AFTEE109 pKa = 4.26KK110 pKa = 10.64FSVKK114 pKa = 10.11AGRR117 pKa = 11.84FLSYY121 pKa = 10.62SGWEE125 pKa = 4.17TEE127 pKa = 4.12EE128 pKa = 3.92PTGLFQYY135 pKa = 10.72SGTGYY140 pKa = 10.75AKK142 pKa = 10.45YY143 pKa = 10.07FYY145 pKa = 10.46GYY147 pKa = 8.58YY148 pKa = 9.85QNGVSAYY155 pKa = 9.1YY156 pKa = 10.43NGGKK160 pKa = 9.13FAVMGSAVTSAFNPNDD176 pKa = 3.64RR177 pKa = 11.84NNVEE181 pKa = 4.24GVDD184 pKa = 3.74DD185 pKa = 4.08KK186 pKa = 11.5KK187 pKa = 11.32GYY189 pKa = 10.25EE190 pKa = 3.97FGLAVMPIEE199 pKa = 4.54GLTAKK204 pKa = 10.48AFYY207 pKa = 10.36IADD210 pKa = 3.91NDD212 pKa = 3.77TDD214 pKa = 3.67TDD216 pKa = 4.21IINVWVSYY224 pKa = 10.69AVAGFTFAGEE234 pKa = 4.4YY235 pKa = 8.67NTVEE239 pKa = 4.33YY240 pKa = 10.23GDD242 pKa = 3.92SSAVVDD248 pKa = 4.3GDD250 pKa = 3.64GDD252 pKa = 4.27GYY254 pKa = 11.79LLMANYY260 pKa = 10.73AKK262 pKa = 10.43GPYY265 pKa = 9.91GITLRR270 pKa = 11.84YY271 pKa = 9.32HH272 pKa = 6.92DD273 pKa = 6.08FEE275 pKa = 5.36IQDD278 pKa = 3.55AGGATVDD285 pKa = 4.31DD286 pKa = 5.07GSAITLSPSYY296 pKa = 10.56KK297 pKa = 10.35VADD300 pKa = 3.62NLLLVGEE307 pKa = 4.26YY308 pKa = 10.76RR309 pKa = 11.84MDD311 pKa = 3.68EE312 pKa = 4.12SDD314 pKa = 3.65TNGDD318 pKa = 3.38SDD320 pKa = 4.01SFAIEE325 pKa = 3.79ALFTFF330 pKa = 5.15

Molecular weight: 35.36 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S5TJZ1|A0A2S5TJZ1_9GAMM Enoyl-CoA hydratase OS=Solimonas fluminis OX=2086571 GN=C3942_06335 PE=3 SV=1
MM1 pKa = 6.59ATKK4 pKa = 9.57RR5 pKa = 11.84TFQPKK10 pKa = 8.81KK11 pKa = 8.99LRR13 pKa = 11.84RR14 pKa = 11.84ARR16 pKa = 11.84THH18 pKa = 5.92GFRR21 pKa = 11.84ARR23 pKa = 11.84MATVGGRR30 pKa = 11.84KK31 pKa = 9.31VISRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84AKK39 pKa = 9.94GRR41 pKa = 11.84KK42 pKa = 8.89RR43 pKa = 11.84LIPP46 pKa = 4.02

Molecular weight: 5.4 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4276

0

4276

1399617

29

4449

327.3

35.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.38 ± 0.054

0.953 ± 0.013

5.316 ± 0.029

5.809 ± 0.036

3.444 ± 0.022

8.81 ± 0.047

2.092 ± 0.021

4.189 ± 0.028

3.128 ± 0.034

11.069 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.242 ± 0.021

2.531 ± 0.026

5.578 ± 0.036

3.926 ± 0.022

7.666 ± 0.038

5.267 ± 0.034

4.629 ± 0.039

7.006 ± 0.031

1.483 ± 0.017

2.481 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski