Amino acid dipepetide frequency for Rhizoctonia cerealis alphaendornavirus 1

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.829AlaAla: 3.829 ± 0.0
1.392AlaCys: 1.392 ± 0.0
3.829AlaAsp: 3.829 ± 0.0
4.003AlaGlu: 4.003 ± 0.0
1.74AlaPhe: 1.74 ± 0.0
2.611AlaGly: 2.611 ± 0.0
1.218AlaHis: 1.218 ± 0.0
4.525AlaIle: 4.525 ± 0.0
4.873AlaLys: 4.873 ± 0.0
5.047AlaLeu: 5.047 ± 0.0
2.959AlaMet: 2.959 ± 0.0
3.481AlaAsn: 3.481 ± 0.0
1.914AlaPro: 1.914 ± 0.0
3.133AlaGln: 3.133 ± 0.0
3.133AlaArg: 3.133 ± 0.0
4.525AlaSer: 4.525 ± 0.0
4.351AlaThr: 4.351 ± 0.0
3.655AlaVal: 3.655 ± 0.0
0.696AlaTrp: 0.696 ± 0.0
1.392AlaTyr: 1.392 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.044CysAla: 1.044 ± 0.0
0.87CysCys: 0.87 ± 0.0
0.696CysAsp: 0.696 ± 0.0
0.87CysGlu: 0.87 ± 0.0
0.522CysPhe: 0.522 ± 0.0
1.218CysGly: 1.218 ± 0.0
0.87CysHis: 0.87 ± 0.0
0.174CysIle: 0.174 ± 0.0
1.566CysLys: 1.566 ± 0.0
1.218CysLeu: 1.218 ± 0.0
0.87CysMet: 0.87 ± 0.0
1.566CysAsn: 1.566 ± 0.0
0.87CysPro: 0.87 ± 0.0
0.522CysGln: 0.522 ± 0.0
1.044CysArg: 1.044 ± 0.0
1.392CysSer: 1.392 ± 0.0
1.044CysThr: 1.044 ± 0.0
1.392CysVal: 1.392 ± 0.0
0.522CysTrp: 0.522 ± 0.0
0.348CysTyr: 0.348 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.829AspAla: 3.829 ± 0.0
0.348AspCys: 0.348 ± 0.0
5.047AspAsp: 5.047 ± 0.0
5.917AspGlu: 5.917 ± 0.0
0.696AspPhe: 0.696 ± 0.0
4.177AspGly: 4.177 ± 0.0
1.392AspHis: 1.392 ± 0.0
3.829AspIle: 3.829 ± 0.0
4.525AspLys: 4.525 ± 0.0
4.699AspLeu: 4.699 ± 0.0
1.392AspMet: 1.392 ± 0.0
4.351AspAsn: 4.351 ± 0.0
2.785AspPro: 2.785 ± 0.0
4.177AspGln: 4.177 ± 0.0
2.959AspArg: 2.959 ± 0.0
4.177AspSer: 4.177 ± 0.0
2.785AspThr: 2.785 ± 0.0
3.655AspVal: 3.655 ± 0.0
1.392AspTrp: 1.392 ± 0.0
1.392AspTyr: 1.392 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.351GluAla: 4.351 ± 0.0
0.87GluCys: 0.87 ± 0.0
3.133GluAsp: 3.133 ± 0.0
4.177GluGlu: 4.177 ± 0.0
1.914GluPhe: 1.914 ± 0.0
4.351GluGly: 4.351 ± 0.0
2.959GluHis: 2.959 ± 0.0
3.829GluIle: 3.829 ± 0.0
2.088GluLys: 2.088 ± 0.0
5.569GluLeu: 5.569 ± 0.0
1.914GluMet: 1.914 ± 0.0
2.785GluAsn: 2.785 ± 0.0
3.655GluPro: 3.655 ± 0.0
3.133GluGln: 3.133 ± 0.0
2.959GluArg: 2.959 ± 0.0
5.047GluSer: 5.047 ± 0.0
4.177GluThr: 4.177 ± 0.0
3.655GluVal: 3.655 ± 0.0
1.74GluTrp: 1.74 ± 0.0
1.74GluTyr: 1.74 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
1.74PheAla: 1.74 ± 0.0
0.522PheCys: 0.522 ± 0.0
2.959PheAsp: 2.959 ± 0.0
1.914PheGlu: 1.914 ± 0.0
0.87PhePhe: 0.87 ± 0.0
1.74PheGly: 1.74 ± 0.0
0.696PheHis: 0.696 ± 0.0
1.914PheIle: 1.914 ± 0.0
3.481PheLys: 3.481 ± 0.0
1.74PheLeu: 1.74 ± 0.0
0.348PheMet: 0.348 ± 0.0
2.088PheAsn: 2.088 ± 0.0
0.348PhePro: 0.348 ± 0.0
0.522PheGln: 0.522 ± 0.0
0.522PheArg: 0.522 ± 0.0
1.566PheSer: 1.566 ± 0.0
1.74PheThr: 1.74 ± 0.0
1.566PheVal: 1.566 ± 0.0
0.522PheTrp: 0.522 ± 0.0
0.87PheTyr: 0.87 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.133GlyAla: 3.133 ± 0.0
0.87GlyCys: 0.87 ± 0.0
3.829GlyAsp: 3.829 ± 0.0
3.481GlyGlu: 3.481 ± 0.0
1.218GlyPhe: 1.218 ± 0.0
2.436GlyGly: 2.436 ± 0.0
1.392GlyHis: 1.392 ± 0.0
3.481GlyIle: 3.481 ± 0.0
5.221GlyLys: 5.221 ± 0.0
4.003GlyLeu: 4.003 ± 0.0
1.044GlyMet: 1.044 ± 0.0
3.307GlyAsn: 3.307 ± 0.0
2.611GlyPro: 2.611 ± 0.0
1.392GlyGln: 1.392 ± 0.0
1.566GlyArg: 1.566 ± 0.0
2.088GlySer: 2.088 ± 0.0
4.699GlyThr: 4.699 ± 0.0
2.611GlyVal: 2.611 ± 0.0
0.87GlyTrp: 0.87 ± 0.0
2.262GlyTyr: 2.262 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.959HisAla: 2.959 ± 0.0
0.696HisCys: 0.696 ± 0.0
2.611HisAsp: 2.611 ± 0.0
1.392HisGlu: 1.392 ± 0.0
1.392HisPhe: 1.392 ± 0.0
1.392HisGly: 1.392 ± 0.0
0.522HisHis: 0.522 ± 0.0
2.088HisIle: 2.088 ± 0.0
1.044HisLys: 1.044 ± 0.0
2.436HisLeu: 2.436 ± 0.0
0.522HisMet: 0.522 ± 0.0
0.696HisAsn: 0.696 ± 0.0
1.392HisPro: 1.392 ± 0.0
1.392HisGln: 1.392 ± 0.0
1.218HisArg: 1.218 ± 0.0
1.392HisSer: 1.392 ± 0.0
2.785HisThr: 2.785 ± 0.0
1.566HisVal: 1.566 ± 0.0
0.522HisTrp: 0.522 ± 0.0
1.044HisTyr: 1.044 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.003IleAla: 4.003 ± 0.0
1.044IleCys: 1.044 ± 0.0
3.829IleAsp: 3.829 ± 0.0
4.177IleGlu: 4.177 ± 0.0
0.87IlePhe: 0.87 ± 0.0
3.133IleGly: 3.133 ± 0.0
2.262IleHis: 2.262 ± 0.0
2.785IleIle: 2.785 ± 0.0
5.221IleLys: 5.221 ± 0.0
5.395IleLeu: 5.395 ± 0.0
1.044IleMet: 1.044 ± 0.0
4.177IleAsn: 4.177 ± 0.0
2.262IlePro: 2.262 ± 0.0
3.829IleGln: 3.829 ± 0.0
3.481IleArg: 3.481 ± 0.0
3.133IleSer: 3.133 ± 0.0
5.047IleThr: 5.047 ± 0.0
4.699IleVal: 4.699 ± 0.0
0.696IleTrp: 0.696 ± 0.0
2.785IleTyr: 2.785 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.959LysAla: 2.959 ± 0.0
1.218LysCys: 1.218 ± 0.0
3.829LysAsp: 3.829 ± 0.0
4.873LysGlu: 4.873 ± 0.0
2.959LysPhe: 2.959 ± 0.0
3.655LysGly: 3.655 ± 0.0
1.392LysHis: 1.392 ± 0.0
4.003LysIle: 4.003 ± 0.0
3.481LysLys: 3.481 ± 0.0
6.787LysLeu: 6.787 ± 0.0
2.262LysMet: 2.262 ± 0.0
3.481LysAsn: 3.481 ± 0.0
5.395LysPro: 5.395 ± 0.0
2.262LysGln: 2.262 ± 0.0
2.262LysArg: 2.262 ± 0.0
4.699LysSer: 4.699 ± 0.0
4.873LysThr: 4.873 ± 0.0
5.917LysVal: 5.917 ± 0.0
0.522LysTrp: 0.522 ± 0.0
2.959LysTyr: 2.959 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
6.091LeuAla: 6.091 ± 0.0
2.088LeuCys: 2.088 ± 0.0
5.917LeuAsp: 5.917 ± 0.0
4.177LeuGlu: 4.177 ± 0.0
2.088LeuPhe: 2.088 ± 0.0
4.351LeuGly: 4.351 ± 0.0
1.566LeuHis: 1.566 ± 0.0
3.481LeuIle: 3.481 ± 0.0
6.961LeuLys: 6.961 ± 0.0
7.832LeuLeu: 7.832 ± 0.0
1.392LeuMet: 1.392 ± 0.0
5.047LeuAsn: 5.047 ± 0.0
3.829LeuPro: 3.829 ± 0.0
3.133LeuGln: 3.133 ± 0.0
3.655LeuArg: 3.655 ± 0.0
6.961LeuSer: 6.961 ± 0.0
8.18LeuThr: 8.18 ± 0.0
6.091LeuVal: 6.091 ± 0.0
0.522LeuTrp: 0.522 ± 0.0
2.611LeuTyr: 2.611 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
2.436MetAla: 2.436 ± 0.0
0.696MetCys: 0.696 ± 0.0
1.74MetAsp: 1.74 ± 0.0
2.262MetGlu: 2.262 ± 0.0
0.348MetPhe: 0.348 ± 0.0
1.044MetGly: 1.044 ± 0.0
1.044MetHis: 1.044 ± 0.0
3.133MetIle: 3.133 ± 0.0
1.566MetLys: 1.566 ± 0.0
1.914MetLeu: 1.914 ± 0.0
0.87MetMet: 0.87 ± 0.0
0.87MetAsn: 0.87 ± 0.0
1.914MetPro: 1.914 ± 0.0
1.218MetGln: 1.218 ± 0.0
1.566MetArg: 1.566 ± 0.0
1.914MetSer: 1.914 ± 0.0
0.87MetThr: 0.87 ± 0.0
1.74MetVal: 1.74 ± 0.0
0.522MetTrp: 0.522 ± 0.0
1.044MetTyr: 1.044 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.133AsnAla: 3.133 ± 0.0
2.088AsnCys: 2.088 ± 0.0
2.785AsnAsp: 2.785 ± 0.0
2.959AsnGlu: 2.959 ± 0.0
0.87AsnPhe: 0.87 ± 0.0
1.74AsnGly: 1.74 ± 0.0
1.044AsnHis: 1.044 ± 0.0
3.829AsnIle: 3.829 ± 0.0
3.133AsnLys: 3.133 ± 0.0
6.961AsnLeu: 6.961 ± 0.0
2.436AsnMet: 2.436 ± 0.0
1.392AsnAsn: 1.392 ± 0.0
1.914AsnPro: 1.914 ± 0.0
2.262AsnGln: 2.262 ± 0.0
1.74AsnArg: 1.74 ± 0.0
3.307AsnSer: 3.307 ± 0.0
4.003AsnThr: 4.003 ± 0.0
2.785AsnVal: 2.785 ± 0.0
1.74AsnTrp: 1.74 ± 0.0
1.74AsnTyr: 1.74 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
3.307ProAla: 3.307 ± 0.0
0.87ProCys: 0.87 ± 0.0
2.611ProAsp: 2.611 ± 0.0
3.133ProGlu: 3.133 ± 0.0
0.87ProPhe: 0.87 ± 0.0
2.785ProGly: 2.785 ± 0.0
1.392ProHis: 1.392 ± 0.0
2.959ProIle: 2.959 ± 0.0
1.914ProLys: 1.914 ± 0.0
3.829ProLeu: 3.829 ± 0.0
0.696ProMet: 0.696 ± 0.0
3.481ProAsn: 3.481 ± 0.0
1.566ProPro: 1.566 ± 0.0
2.785ProGln: 2.785 ± 0.0
1.392ProArg: 1.392 ± 0.0
2.611ProSer: 2.611 ± 0.0
3.829ProThr: 3.829 ± 0.0
3.133ProVal: 3.133 ± 0.0
1.218ProTrp: 1.218 ± 0.0
1.74ProTyr: 1.74 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
3.481GlnAla: 3.481 ± 0.0
0.522GlnCys: 0.522 ± 0.0
1.74GlnAsp: 1.74 ± 0.0
2.785GlnGlu: 2.785 ± 0.0
1.218GlnPhe: 1.218 ± 0.0
1.218GlnGly: 1.218 ± 0.0
2.088GlnHis: 2.088 ± 0.0
2.785GlnIle: 2.785 ± 0.0
1.914GlnLys: 1.914 ± 0.0
3.829GlnLeu: 3.829 ± 0.0
1.566GlnMet: 1.566 ± 0.0
1.218GlnAsn: 1.218 ± 0.0
3.307GlnPro: 3.307 ± 0.0
2.088GlnGln: 2.088 ± 0.0
1.218GlnArg: 1.218 ± 0.0
2.959GlnSer: 2.959 ± 0.0
2.611GlnThr: 2.611 ± 0.0
2.785GlnVal: 2.785 ± 0.0
0.696GlnTrp: 0.696 ± 0.0
1.044GlnTyr: 1.044 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
2.088ArgAla: 2.088 ± 0.0
0.522ArgCys: 0.522 ± 0.0
2.611ArgAsp: 2.611 ± 0.0
2.262ArgGlu: 2.262 ± 0.0
1.218ArgPhe: 1.218 ± 0.0
1.392ArgGly: 1.392 ± 0.0
1.218ArgHis: 1.218 ± 0.0
2.785ArgIle: 2.785 ± 0.0
3.655ArgLys: 3.655 ± 0.0
4.177ArgLeu: 4.177 ± 0.0
1.74ArgMet: 1.74 ± 0.0
3.133ArgAsn: 3.133 ± 0.0
2.088ArgPro: 2.088 ± 0.0
1.044ArgGln: 1.044 ± 0.0
1.218ArgArg: 1.218 ± 0.0
2.436ArgSer: 2.436 ± 0.0
2.436ArgThr: 2.436 ± 0.0
3.133ArgVal: 3.133 ± 0.0
0.522ArgTrp: 0.522 ± 0.0
1.74ArgTyr: 1.74 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
3.655SerAla: 3.655 ± 0.0
0.522SerCys: 0.522 ± 0.0
5.047SerAsp: 5.047 ± 0.0
5.395SerGlu: 5.395 ± 0.0
2.785SerPhe: 2.785 ± 0.0
2.785SerGly: 2.785 ± 0.0
1.914SerHis: 1.914 ± 0.0
5.395SerIle: 5.395 ± 0.0
4.177SerLys: 4.177 ± 0.0
6.613SerLeu: 6.613 ± 0.0
1.392SerMet: 1.392 ± 0.0
2.785SerAsn: 2.785 ± 0.0
1.914SerPro: 1.914 ± 0.0
0.87SerGln: 0.87 ± 0.0
3.133SerArg: 3.133 ± 0.0
3.655SerSer: 3.655 ± 0.0
4.351SerThr: 4.351 ± 0.0
5.221SerVal: 5.221 ± 0.0
0.87SerTrp: 0.87 ± 0.0
2.785SerTyr: 2.785 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
3.655ThrAla: 3.655 ± 0.0
1.914ThrCys: 1.914 ± 0.0
4.351ThrAsp: 4.351 ± 0.0
3.307ThrGlu: 3.307 ± 0.0
2.436ThrPhe: 2.436 ± 0.0
5.395ThrGly: 5.395 ± 0.0
1.392ThrHis: 1.392 ± 0.0
4.525ThrIle: 4.525 ± 0.0
6.613ThrLys: 6.613 ± 0.0
5.221ThrLeu: 5.221 ± 0.0
2.959ThrMet: 2.959 ± 0.0
2.785ThrAsn: 2.785 ± 0.0
3.481ThrPro: 3.481 ± 0.0
3.655ThrGln: 3.655 ± 0.0
2.611ThrArg: 2.611 ± 0.0
4.177ThrSer: 4.177 ± 0.0
6.265ThrThr: 6.265 ± 0.0
4.699ThrVal: 4.699 ± 0.0
1.392ThrTrp: 1.392 ± 0.0
3.481ThrTyr: 3.481 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
3.133ValAla: 3.133 ± 0.0
0.696ValCys: 0.696 ± 0.0
4.003ValAsp: 4.003 ± 0.0
2.959ValGlu: 2.959 ± 0.0
1.566ValPhe: 1.566 ± 0.0
4.699ValGly: 4.699 ± 0.0
3.307ValHis: 3.307 ± 0.0
4.351ValIle: 4.351 ± 0.0
5.221ValLys: 5.221 ± 0.0
3.829ValLeu: 3.829 ± 0.0
1.566ValMet: 1.566 ± 0.0
2.959ValAsn: 2.959 ± 0.0
2.436ValPro: 2.436 ± 0.0
1.74ValGln: 1.74 ± 0.0
4.003ValArg: 4.003 ± 0.0
5.569ValSer: 5.569 ± 0.0
5.221ValThr: 5.221 ± 0.0
3.307ValVal: 3.307 ± 0.0
1.218ValTrp: 1.218 ± 0.0
2.262ValTyr: 2.262 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
0.696TrpAla: 0.696 ± 0.0
0.0TrpCys: 0.0 ± 0.0
0.87TrpAsp: 0.87 ± 0.0
1.392TrpGlu: 1.392 ± 0.0
0.696TrpPhe: 0.696 ± 0.0
0.174TrpGly: 0.174 ± 0.0
0.87TrpHis: 0.87 ± 0.0
1.566TrpIle: 1.566 ± 0.0
1.044TrpLys: 1.044 ± 0.0
1.914TrpLeu: 1.914 ± 0.0
0.522TrpMet: 0.522 ± 0.0
0.522TrpAsn: 0.522 ± 0.0
1.044TrpPro: 1.044 ± 0.0
0.696TrpGln: 0.696 ± 0.0
0.696TrpArg: 0.696 ± 0.0
1.044TrpSer: 1.044 ± 0.0
1.566TrpThr: 1.566 ± 0.0
1.044TrpVal: 1.044 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.174TrpTyr: 0.174 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.959TyrAla: 2.959 ± 0.0
0.87TyrCys: 0.87 ± 0.0
2.088TyrAsp: 2.088 ± 0.0
2.611TyrGlu: 2.611 ± 0.0
1.392TyrPhe: 1.392 ± 0.0
1.218TyrGly: 1.218 ± 0.0
0.522TyrHis: 0.522 ± 0.0
2.436TyrIle: 2.436 ± 0.0
2.088TyrLys: 2.088 ± 0.0
2.959TyrLeu: 2.959 ± 0.0
1.044TyrMet: 1.044 ± 0.0
1.74TyrAsn: 1.74 ± 0.0
1.392TyrPro: 1.392 ± 0.0
1.218TyrGln: 1.218 ± 0.0
1.044TyrArg: 1.044 ± 0.0
2.611TyrSer: 2.611 ± 0.0
3.481TyrThr: 3.481 ± 0.0
1.392TyrVal: 1.392 ± 0.0
0.348TyrTrp: 0.348 ± 0.0
0.87TyrTyr: 0.87 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (5747 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski