Avian paraavulavirus 3

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Avulavirinae; Paraavulavirus

Average proteome isoelectric point is 6.46

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D5FGX3|D5FGX3_9MONO Phosphoprotein OS=Avian paraavulavirus 3 OX=2560327 PE=4 SV=1
MM1 pKa = 7.51AGIFNTYY8 pKa = 8.9EE9 pKa = 4.47LFVKK13 pKa = 10.42DD14 pKa = 3.59QTCMHH19 pKa = 6.52KK20 pKa = 10.31RR21 pKa = 11.84AASLISGGQLKK32 pKa = 11.04SNIPVFITTRR42 pKa = 11.84DD43 pKa = 3.64DD44 pKa = 3.86PAVRR48 pKa = 11.84WNLVCFNLRR57 pKa = 11.84LIVSEE62 pKa = 4.42SSTSVIRR69 pKa = 11.84QGAMISLLSVTASNMRR85 pKa = 11.84ALAAIAGQTDD95 pKa = 3.12EE96 pKa = 4.87SMINIIEE103 pKa = 4.22VVDD106 pKa = 4.23FNGLEE111 pKa = 4.17PQCDD115 pKa = 3.61PRR117 pKa = 11.84SGLDD121 pKa = 3.31AQKK124 pKa = 10.97QDD126 pKa = 3.37MFKK129 pKa = 10.79DD130 pKa = 3.46IASDD134 pKa = 3.56MPKK137 pKa = 10.18VLGSGTPFQNVSAEE151 pKa = 4.35TNNPEE156 pKa = 4.0DD157 pKa = 2.71THH159 pKa = 5.91MFLRR163 pKa = 11.84SAISVLTQIWILVAKK178 pKa = 10.57AMTNIEE184 pKa = 4.21GSHH187 pKa = 5.58EE188 pKa = 4.02ASDD191 pKa = 3.71RR192 pKa = 11.84RR193 pKa = 11.84LAKK196 pKa = 9.15YY197 pKa = 6.8TQQNRR202 pKa = 11.84IDD204 pKa = 3.84RR205 pKa = 11.84RR206 pKa = 11.84FMLAQATRR214 pKa = 11.84TACQQIIKK222 pKa = 10.37DD223 pKa = 3.65SLTIRR228 pKa = 11.84RR229 pKa = 11.84FLVTEE234 pKa = 4.05LRR236 pKa = 11.84KK237 pKa = 10.22SRR239 pKa = 11.84GALHH243 pKa = 6.61SGSSYY248 pKa = 10.2YY249 pKa = 11.61AMVGDD254 pKa = 3.76MQAYY258 pKa = 9.01IFNAGLTPFLTTLRR272 pKa = 11.84YY273 pKa = 10.01GIGTKK278 pKa = 9.71YY279 pKa = 9.83HH280 pKa = 6.69ALAISSLTGDD290 pKa = 3.69LNKK293 pKa = 10.25IKK295 pKa = 10.77GLLTLYY301 pKa = 10.44KK302 pKa = 10.41EE303 pKa = 4.44KK304 pKa = 10.97GSDD307 pKa = 3.31AGYY310 pKa = 8.59MALLEE315 pKa = 5.34DD316 pKa = 4.72ADD318 pKa = 4.33CMQFAPGNYY327 pKa = 9.65ALLYY331 pKa = 9.13SYY333 pKa = 11.68AMGVASVHH341 pKa = 6.57DD342 pKa = 4.01EE343 pKa = 3.81GMRR346 pKa = 11.84NYY348 pKa = 10.34QYY350 pKa = 11.66ARR352 pKa = 11.84RR353 pKa = 11.84FLHH356 pKa = 6.34KK357 pKa = 10.55GMYY360 pKa = 9.57QFGRR364 pKa = 11.84DD365 pKa = 2.85IATQHH370 pKa = 4.81QHH372 pKa = 6.96ALDD375 pKa = 3.76EE376 pKa = 4.51SLAQEE381 pKa = 4.08MRR383 pKa = 11.84ITEE386 pKa = 4.09ADD388 pKa = 3.74RR389 pKa = 11.84ANLKK393 pKa = 10.76VMMANIGEE401 pKa = 4.21ASHH404 pKa = 6.71YY405 pKa = 10.95SDD407 pKa = 4.53IPSAGPSGIPAFNDD421 pKa = 3.37PPEE424 pKa = 4.14EE425 pKa = 4.0LFGEE429 pKa = 4.25PSYY432 pKa = 11.23RR433 pKa = 11.84KK434 pKa = 9.91LPEE437 pKa = 4.05EE438 pKa = 4.08PQVVEE443 pKa = 4.38LQDD446 pKa = 4.46RR447 pKa = 11.84DD448 pKa = 4.56DD449 pKa = 5.18DD450 pKa = 4.2EE451 pKa = 4.75QDD453 pKa = 3.42EE454 pKa = 4.6YY455 pKa = 12.1DD456 pKa = 3.37MM457 pKa = 6.54

Molecular weight: 50.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D5FGX5|D5FGX5_9MONO Fusion glycoprotein F0 OS=Avian paraavulavirus 3 OX=2560327 GN=F PE=3 SV=1
MM1 pKa = 7.55AAHH4 pKa = 7.22PNHH7 pKa = 6.99ANPSSSISLMHH18 pKa = 7.63DD19 pKa = 3.5DD20 pKa = 5.63PSIQTQLLAFPLISEE35 pKa = 4.31KK36 pKa = 10.54TEE38 pKa = 3.77TGTTKK43 pKa = 10.57LQPQVRR49 pKa = 11.84MQSFLSTDD57 pKa = 3.07SQKK60 pKa = 10.89YY61 pKa = 9.26HH62 pKa = 6.38LVFINTYY69 pKa = 10.34GFIAEE74 pKa = 5.21DD75 pKa = 4.69FNCSPTNGFVPALFQPKK92 pKa = 10.21SKK94 pKa = 10.29VLSSAMVTLGAVPADD109 pKa = 3.67TVLQDD114 pKa = 3.67LQKK117 pKa = 11.21DD118 pKa = 4.44LIAMRR123 pKa = 11.84FKK125 pKa = 10.78VRR127 pKa = 11.84KK128 pKa = 8.73SASAKK133 pKa = 10.0EE134 pKa = 4.36LILFSTDD141 pKa = 3.52NIPATLTGSSVWKK154 pKa = 9.85NRR156 pKa = 11.84GVIADD161 pKa = 3.74TATSVKK167 pKa = 10.31APGRR171 pKa = 11.84ISCDD175 pKa = 3.25AVCSYY180 pKa = 11.01CITFISFCFFHH191 pKa = 7.8SSALFKK197 pKa = 10.99VPKK200 pKa = 9.56PLLNFEE206 pKa = 4.2TAVAYY211 pKa = 10.62SLVLQVEE218 pKa = 4.53LEE220 pKa = 4.08FPNIKK225 pKa = 9.15DD226 pKa = 3.71TLHH229 pKa = 6.46EE230 pKa = 4.86KK231 pKa = 10.12YY232 pKa = 10.72LKK234 pKa = 11.01NKK236 pKa = 9.43DD237 pKa = 3.87SKK239 pKa = 10.11WYY241 pKa = 8.35CTIDD245 pKa = 3.09IHH247 pKa = 8.41IGNLLKK253 pKa = 10.05RR254 pKa = 11.84TAKK257 pKa = 9.2QRR259 pKa = 11.84RR260 pKa = 11.84RR261 pKa = 11.84TPSEE265 pKa = 3.25ITQKK269 pKa = 9.29VRR271 pKa = 11.84RR272 pKa = 11.84MGFRR276 pKa = 11.84IGLYY280 pKa = 9.89DD281 pKa = 3.61LWGPTIVVEE290 pKa = 4.17LTGSSSKK297 pKa = 10.74SLQGFFSSEE306 pKa = 3.47RR307 pKa = 11.84LACHH311 pKa = 7.22PISQYY316 pKa = 10.74NPHH319 pKa = 6.29VGQLIWAHH327 pKa = 6.2DD328 pKa = 3.73VSITGCHH335 pKa = 5.71MIISEE340 pKa = 4.31LEE342 pKa = 4.02KK343 pKa = 10.93KK344 pKa = 9.98KK345 pKa = 10.84ALAMADD351 pKa = 3.78LTVSDD356 pKa = 4.43AVAINTTIKK365 pKa = 10.42EE366 pKa = 4.2LVPFRR371 pKa = 11.84LFRR374 pKa = 11.84KK375 pKa = 9.62

Molecular weight: 41.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

4535

375

2198

755.8

84.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.086 ± 0.626

2.426 ± 0.337

5.006 ± 0.36

4.3 ± 0.295

3.462 ± 0.557

4.939 ± 0.311

2.492 ± 0.262

8.093 ± 0.872

4.19 ± 0.525

11.51 ± 1.231

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.073 ± 0.367

5.05 ± 0.311

4.851 ± 0.585

4.564 ± 0.371

4.917 ± 0.351

9.46 ± 0.663

7.1 ± 0.492

5.204 ± 0.265

0.794 ± 0.169

3.44 ± 0.461
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski