Yata virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Ephemerovirus; Yata ephemerovirus

Average proteome isoelectric point is 6.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A096ZGU9|A0A096ZGU9_9RHAB GDP polyribonucleotidyltransferase OS=Yata virus OX=1272960 GN=L PE=4 SV=1
MM1 pKa = 7.68ALLLSGVLTKK11 pKa = 10.67SDD13 pKa = 3.74FQTDD17 pKa = 3.12NQLFDD22 pKa = 4.07FVEE25 pKa = 4.91KK26 pKa = 10.23IVEE29 pKa = 4.16EE30 pKa = 4.3TTRR33 pKa = 11.84LAIKK37 pKa = 10.67NSIWWSGLQFTQIEE51 pKa = 4.37RR52 pKa = 11.84EE53 pKa = 4.4VMVGMNWLVYY63 pKa = 9.97IDD65 pKa = 4.58NEE67 pKa = 3.78EE68 pKa = 4.15SDD70 pKa = 3.85RR71 pKa = 11.84VDD73 pKa = 3.07YY74 pKa = 10.97SFWFGVPDD82 pKa = 3.67SVGWRR87 pKa = 11.84MFRR90 pKa = 11.84NPNTRR95 pKa = 11.84CIASNILEE103 pKa = 4.2NRR105 pKa = 11.84QSYY108 pKa = 10.36CFIQYY113 pKa = 9.58FSQQ116 pKa = 3.45

Molecular weight: 13.77 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A096ZGV7|A0A096ZGV7_9RHAB Isoform of A0A096ZGU4 Alpha2x protein OS=Yata virus OX=1272960 GN=alpha2 PE=4 SV=1
MM1 pKa = 7.07IARR4 pKa = 11.84WRR6 pKa = 11.84KK7 pKa = 9.69DD8 pKa = 3.23RR9 pKa = 11.84ADD11 pKa = 3.59KK12 pKa = 10.9AKK14 pKa = 10.35KK15 pKa = 9.98DD16 pKa = 3.73SPPEE20 pKa = 3.97YY21 pKa = 10.17SSSSSLWMSTAPAYY35 pKa = 10.35DD36 pKa = 3.72GSFGPIFHH44 pKa = 6.72NPKK47 pKa = 10.2PEE49 pKa = 3.87PTKK52 pKa = 9.36QAFMIEE58 pKa = 4.28CSLEE62 pKa = 4.28VISKK66 pKa = 9.99KK67 pKa = 8.58QVEE70 pKa = 4.8GVKK73 pKa = 10.77GMLKK77 pKa = 9.97ILDD80 pKa = 4.33HH81 pKa = 7.12LVDD84 pKa = 4.61NYY86 pKa = 11.39DD87 pKa = 2.94GSYY90 pKa = 8.62WGKK93 pKa = 8.99PLIVMMYY100 pKa = 10.03LVLGTHH106 pKa = 6.06MEE108 pKa = 4.21SKK110 pKa = 10.62SRR112 pKa = 11.84IGIDD116 pKa = 2.58SWIYY120 pKa = 10.06QRR122 pKa = 11.84SLSEE126 pKa = 3.57AVYY129 pKa = 10.17IITEE133 pKa = 4.48TPVSMTSSGLTYY145 pKa = 11.06NNYY148 pKa = 8.29TQTTYY153 pKa = 10.87LGEE156 pKa = 4.39PASVTYY162 pKa = 10.41SFKK165 pKa = 10.3ATPTKK170 pKa = 10.25RR171 pKa = 11.84YY172 pKa = 8.76SRR174 pKa = 11.84PIIGAYY180 pKa = 9.31KK181 pKa = 10.39LPLANGLPPPEE192 pKa = 4.8LNDD195 pKa = 3.1VLRR198 pKa = 11.84YY199 pKa = 9.92YY200 pKa = 11.4GLTTRR205 pKa = 11.84IQDD208 pKa = 3.48NGEE211 pKa = 4.01SSVEE215 pKa = 3.9FLPP218 pKa = 5.13

Molecular weight: 24.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10

1

11

4743

53

2117

431.2

49.49

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.563 ± 0.472

1.982 ± 0.284

5.988 ± 0.312

6.156 ± 0.413

3.9 ± 0.312

5.882 ± 0.328

2.277 ± 0.186

8.202 ± 0.402

7.147 ± 0.266

9.994 ± 0.47

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.635 ± 0.31

5.376 ± 0.295

4.132 ± 0.425

2.867 ± 0.13

4.786 ± 0.349

7.506 ± 0.442

5.925 ± 0.171

5.355 ± 0.226

1.855 ± 0.168

4.47 ± 0.484
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski