Corynebacterium vitaeruminis DSM 20294

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium vitaeruminis

Average proteome isoelectric point is 5.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2565 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W5Y3R4|W5Y3R4_9CORY Ribonucleoside-diphosphate reductase subunit beta OS=Corynebacterium vitaeruminis DSM 20294 OX=1224164 GN=B843_10600 PE=3 SV=1
MM1 pKa = 7.43LSVMVTGLTVFSPASASAQDD21 pKa = 3.92SFTDD25 pKa = 4.01PSLGDD30 pKa = 3.86ALTDD34 pKa = 4.05LATALDD40 pKa = 4.22DD41 pKa = 4.33QNAADD46 pKa = 4.0TTDD49 pKa = 3.13ATGLDD54 pKa = 3.64VSASVDD60 pKa = 3.24AADD63 pKa = 3.71ITDD66 pKa = 3.57SAEE69 pKa = 4.09AVSVDD74 pKa = 3.63PGAAALIDD82 pKa = 3.56QSLQGVGQSIGEE94 pKa = 4.0LDD96 pKa = 3.8AATGLAFGPQLAFVAPMAVTDD117 pKa = 4.64PFAPTPVFTEE127 pKa = 4.08DD128 pKa = 4.83FEE130 pKa = 6.21NGTNNTTPTKK140 pKa = 10.44LSDD143 pKa = 3.89YY144 pKa = 10.73IGATNSTTYY153 pKa = 10.39SASGYY158 pKa = 8.22WLNPGYY164 pKa = 10.83CNGFITSFATNLSQDD179 pKa = 4.41NIDD182 pKa = 3.8KK183 pKa = 10.61LYY185 pKa = 10.42CGRR188 pKa = 11.84NGGFDD193 pKa = 3.69PGDD196 pKa = 3.38YY197 pKa = 9.34WAVRR201 pKa = 11.84SKK203 pKa = 11.21VLALGSFSNVPAGTIVTGNEE223 pKa = 3.77SATGKK228 pKa = 10.21FNHH231 pKa = 6.82ALSTNTSGGTPSGVMFQTTKK251 pKa = 10.93DD252 pKa = 3.0IVLPGSSGGRR262 pKa = 11.84FYY264 pKa = 11.5AFSVDD269 pKa = 3.89AAVTGCSNTGSGNSGQVNPNMYY291 pKa = 9.76FQMVQGGKK299 pKa = 8.57TISLPNNGNIDD310 pKa = 3.74PCSSPDD316 pKa = 3.2SRR318 pKa = 11.84QFDD321 pKa = 3.44VTAQYY326 pKa = 10.96GYY328 pKa = 10.74QGGSWGTQSGWIATGKK344 pKa = 10.63VGTFYY349 pKa = 11.03SGAFALDD356 pKa = 3.47NSASVGLILQNSSYY370 pKa = 11.24ASSTGRR376 pKa = 11.84GIANGSSGTYY386 pKa = 9.44PNSPTGRR393 pKa = 11.84RR394 pKa = 11.84TT395 pKa = 3.12

Molecular weight: 40.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W5Y5R0|W5Y5R0_9CORY 50S ribosomal protein L2 OS=Corynebacterium vitaeruminis DSM 20294 OX=1224164 GN=rplB PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.76KK15 pKa = 9.54KK16 pKa = 9.72HH17 pKa = 5.63RR18 pKa = 11.84KK19 pKa = 7.56LLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2565

0

2565

836113

28

3016

326.0

35.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.086 ± 0.071

0.761 ± 0.014

5.831 ± 0.04

6.28 ± 0.054

3.409 ± 0.031

8.544 ± 0.041

2.062 ± 0.02

5.005 ± 0.034

3.364 ± 0.035

9.747 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.248 ± 0.022

2.712 ± 0.029

4.944 ± 0.035

3.171 ± 0.026

6.103 ± 0.045

5.877 ± 0.039

5.951 ± 0.041

8.276 ± 0.045

1.377 ± 0.021

2.254 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski