Vibrio maritimus

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6793 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A090T331|A0A090T331_9VIBR Transcriptional regulator MerR family OS=Vibrio maritimus OX=990268 GN=JCM19240_2269 PE=4 SV=1
MM1 pKa = 7.51QITNLVDD8 pKa = 2.73IWGNSHH14 pKa = 7.34LYY16 pKa = 8.92VQGDD20 pKa = 3.76VSVGTNDD27 pKa = 3.96DD28 pKa = 3.41GRR30 pKa = 11.84FTLFQNSAAQVGGNLSSGEE49 pKa = 4.17MEE51 pKa = 4.7CSNSSSFDD59 pKa = 3.08VDD61 pKa = 3.53GNLEE65 pKa = 4.3TRR67 pKa = 11.84GSLSWSGGQFGLAIQRR83 pKa = 11.84GCFGRR88 pKa = 11.84YY89 pKa = 9.67GEE91 pKa = 4.25TDD93 pKa = 3.2SNNTLEE99 pKa = 4.43GEE101 pKa = 4.39YY102 pKa = 10.5FIDD105 pKa = 3.44QHH107 pKa = 7.65SEE109 pKa = 4.09VYY111 pKa = 9.29TPSWDD116 pKa = 3.49TLRR119 pKa = 11.84EE120 pKa = 4.29SNDD123 pKa = 3.38EE124 pKa = 4.09EE125 pKa = 4.42PQQ127 pKa = 3.29

Molecular weight: 13.93 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A090SUZ0|A0A090SUZ0_9VIBR Uncharacterized protein OS=Vibrio maritimus OX=990268 GN=JCM19240_4996 PE=4 SV=1
MM1 pKa = 7.69SKK3 pKa = 8.98RR4 pKa = 11.84TFQPSVLKK12 pKa = 10.49RR13 pKa = 11.84KK14 pKa = 7.97RR15 pKa = 11.84THH17 pKa = 5.89GFRR20 pKa = 11.84ARR22 pKa = 11.84MATKK26 pKa = 10.44NGRR29 pKa = 11.84KK30 pKa = 9.39VINARR35 pKa = 11.84RR36 pKa = 11.84AKK38 pKa = 10.22GRR40 pKa = 11.84ARR42 pKa = 11.84LSKK45 pKa = 10.83

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6793

0

6793

1574031

37

3915

231.7

25.68

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.763 ± 0.032

1.011 ± 0.012

5.531 ± 0.038

6.273 ± 0.032

4.144 ± 0.021

6.927 ± 0.031

2.192 ± 0.018

6.179 ± 0.026

5.074 ± 0.029

10.153 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.84 ± 0.02

4.146 ± 0.022

3.865 ± 0.02

4.419 ± 0.023

4.415 ± 0.026

6.837 ± 0.03

5.598 ± 0.026

7.317 ± 0.025

1.285 ± 0.014

3.029 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski