Callithrix jacchus (White-tufted-ear marmoset)

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Metazoa; Eumetazoa; Bilateria; Deuterostomia; Chordata; Craniata; Vertebrata; Gnathostomata; Teleostomi; Euteleostomi; Sarcopterygii; Dipnotetrapodomorpha; Tetrapoda; Amniota; Mammalia; Theria; Eutheria; Boreoeutheria;

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 42838 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F7EM48|F7EM48_CALJA Isoform of F7I688 Solute carrier family 39 member 9 OS=Callithrix jacchus OX=9483 GN=SLC39A9 PE=4 SV=2
MM1 pKa = 7.51SFLKK5 pKa = 10.56SFPPPGPAEE14 pKa = 4.04GLLRR18 pKa = 11.84QQPDD22 pKa = 3.4TEE24 pKa = 4.15AVLNGKK30 pKa = 8.91GLGTGTLYY38 pKa = 10.36IAEE41 pKa = 4.77SRR43 pKa = 11.84LSWLDD48 pKa = 3.16GSGLGFSLEE57 pKa = 4.09YY58 pKa = 9.04PTISLHH64 pKa = 5.94ALSRR68 pKa = 11.84DD69 pKa = 3.33RR70 pKa = 11.84SDD72 pKa = 4.01CLGEE76 pKa = 3.91HH77 pKa = 7.02LYY79 pKa = 11.73VMVNAKK85 pKa = 10.44FEE87 pKa = 4.25VEE89 pKa = 4.13AMFTAMCEE97 pKa = 4.33CQALHH102 pKa = 7.39PDD104 pKa = 4.25PEE106 pKa = 6.21DD107 pKa = 4.16EE108 pKa = 6.53DD109 pKa = 5.1SDD111 pKa = 5.45DD112 pKa = 4.29YY113 pKa = 11.91DD114 pKa = 4.07GEE116 pKa = 4.35EE117 pKa = 4.51YY118 pKa = 10.58DD119 pKa = 5.25VEE121 pKa = 4.24AHH123 pKa = 5.97EE124 pKa = 4.68QGQGDD129 pKa = 3.76IPTFYY134 pKa = 10.0TYY136 pKa = 11.09EE137 pKa = 4.17EE138 pKa = 4.62GLSHH142 pKa = 6.9LTAEE146 pKa = 4.71GQATLEE152 pKa = 4.16RR153 pKa = 11.84LEE155 pKa = 4.8GMLSQSVSSQYY166 pKa = 11.68NMAGVRR172 pKa = 11.84TEE174 pKa = 4.15DD175 pKa = 3.91SIRR178 pKa = 11.84DD179 pKa = 3.72YY180 pKa = 11.39EE181 pKa = 5.4DD182 pKa = 3.26GMEE185 pKa = 4.14VDD187 pKa = 3.82TTPTVAGQFEE197 pKa = 4.58DD198 pKa = 4.85ADD200 pKa = 3.71VDD202 pKa = 3.98HH203 pKa = 7.2

Molecular weight: 22.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F6RYC6|F6RYC6_CALJA SNARE-associated protein Snapin OS=Callithrix jacchus OX=9483 GN=SNAPIN PE=2 SV=1
MM1 pKa = 7.1RR2 pKa = 11.84AKK4 pKa = 9.12WRR6 pKa = 11.84KK7 pKa = 9.1KK8 pKa = 9.32RR9 pKa = 11.84MRR11 pKa = 11.84RR12 pKa = 11.84LKK14 pKa = 10.08RR15 pKa = 11.84KK16 pKa = 8.21RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 8.46MRR21 pKa = 11.84QRR23 pKa = 11.84SKK25 pKa = 11.41

Molecular weight: 3.46 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

22593

20245

42838

24220364

13

35445

565.4

63.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.885 ± 0.012

2.205 ± 0.011

4.824 ± 0.009

7.178 ± 0.016

3.611 ± 0.009

6.476 ± 0.017

2.605 ± 0.007

4.435 ± 0.01

5.864 ± 0.015

9.832 ± 0.02

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.151 ± 0.006

3.659 ± 0.008

6.267 ± 0.019

4.77 ± 0.014

5.656 ± 0.011

8.38 ± 0.017

5.347 ± 0.012

5.975 ± 0.014

1.212 ± 0.004

2.632 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski