Kutzneria albida DSM 43870

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Pseudonocardiales; Pseudonocardiaceae; Kutzneria; Kutzneria albida

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8775 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W5W3L5|W5W3L5_9PSEU ABC transporter ATP-binding protein OS=Kutzneria albida DSM 43870 OX=1449976 GN=KALB_2435 PE=4 SV=1
MM1 pKa = 7.73DD2 pKa = 3.49AWIYY6 pKa = 8.9GHH8 pKa = 6.91GMTAPEE14 pKa = 4.11ATSLDD19 pKa = 4.11EE20 pKa = 5.9LISDD24 pKa = 4.49CADD27 pKa = 3.23IPSSLHH33 pKa = 5.95ARR35 pKa = 11.84TVPLPTPRR43 pKa = 11.84DD44 pKa = 3.43AAPWEE49 pKa = 4.0VDD51 pKa = 3.92EE52 pKa = 4.86VCTAQVSDD60 pKa = 4.3LDD62 pKa = 4.79DD63 pKa = 4.13YY64 pKa = 12.07GLL66 pKa = 4.01

Molecular weight: 7.13 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W5WMV5|W5WMV5_9PSEU Penicillin-insensitive transglycosylase OS=Kutzneria albida DSM 43870 OX=1449976 GN=KALB_8749 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.38KK7 pKa = 8.42RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.06RR11 pKa = 11.84MSKK14 pKa = 9.76KK15 pKa = 9.54KK16 pKa = 9.79HH17 pKa = 5.67RR18 pKa = 11.84KK19 pKa = 8.46LLRR22 pKa = 11.84KK23 pKa = 7.95TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 9.84RR31 pKa = 11.84GKK33 pKa = 9.61

Molecular weight: 4.16 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8775

0

8775

2947740

29

8533

335.9

36.02

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.109 ± 0.03

0.874 ± 0.008

5.59 ± 0.018

5.503 ± 0.025

2.761 ± 0.014

9.118 ± 0.027

2.339 ± 0.014

3.082 ± 0.015

1.846 ± 0.019

11.119 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.627 ± 0.01

1.946 ± 0.017

5.81 ± 0.018

3.292 ± 0.018

7.833 ± 0.034

5.351 ± 0.021

6.015 ± 0.023

9.206 ± 0.031

1.567 ± 0.012

2.011 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski