Paspalum striate mosaic virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Mastrevirus

Average proteome isoelectric point is 7.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G1CSA7|G1CSA7_9GEMI Replication-associated protein OS=Paspalum striate mosaic virus OX=1072672 PE=3 SV=1
MM1 pKa = 7.51SSLVSEE7 pKa = 4.65TSNSEE12 pKa = 3.66VGSQMEE18 pKa = 4.29SPGRR22 pKa = 11.84GGQSIDD28 pKa = 4.11APSSSCFKK36 pKa = 10.61VRR38 pKa = 11.84ARR40 pKa = 11.84NLFLTYY46 pKa = 10.4SKK48 pKa = 11.26CNLTAVFLLEE58 pKa = 4.56YY59 pKa = 10.31ISSLLKK65 pKa = 10.36KK66 pKa = 10.11YY67 pKa = 10.27CPTYY71 pKa = 10.32IYY73 pKa = 10.34VAQEE77 pKa = 3.55AHH79 pKa = 7.0KK80 pKa = 10.84DD81 pKa = 3.84GSHH84 pKa = 6.72HH85 pKa = 6.01LHH87 pKa = 7.26CIIQCSKK94 pKa = 10.6YY95 pKa = 10.89VRR97 pKa = 11.84TTSAKK102 pKa = 10.01FFDD105 pKa = 3.42IKK107 pKa = 10.64EE108 pKa = 4.03FHH110 pKa = 7.32PNVQNPRR117 pKa = 11.84MPKK120 pKa = 9.95KK121 pKa = 10.49ALSYY125 pKa = 10.07CKK127 pKa = 10.06KK128 pKa = 10.52SPISEE133 pKa = 4.09AEE135 pKa = 3.75YY136 pKa = 10.93GVFQEE141 pKa = 4.71IKK143 pKa = 10.24RR144 pKa = 11.84PRR146 pKa = 11.84KK147 pKa = 9.52KK148 pKa = 10.52KK149 pKa = 10.51ADD151 pKa = 3.62APSTKK156 pKa = 9.4DD157 pKa = 2.93AKK159 pKa = 9.68MAEE162 pKa = 4.41IIKK165 pKa = 10.69SSTNKK170 pKa = 9.84EE171 pKa = 4.34DD172 pKa = 3.65YY173 pKa = 11.07LSMVRR178 pKa = 11.84KK179 pKa = 10.02SFPFDD184 pKa = 2.63WATRR188 pKa = 11.84LQQFQFSAEE197 pKa = 4.17SLFPSTPPPYY207 pKa = 10.16VDD209 pKa = 3.41PFGMPSQDD217 pKa = 2.97THH219 pKa = 6.58PVIGAWLRR227 pKa = 11.84DD228 pKa = 3.46EE229 pKa = 5.67LYY231 pKa = 10.07TVSPYY236 pKa = 10.84AYY238 pKa = 9.12SIHH241 pKa = 6.61NGVSEE246 pKa = 4.27EE247 pKa = 3.99QAKK250 pKa = 10.77LDD252 pKa = 3.97LQWMSDD258 pKa = 3.34LSRR261 pKa = 11.84TEE263 pKa = 3.67VLLNEE268 pKa = 5.02DD269 pKa = 3.51VPSTYY274 pKa = 10.35VVQQEE279 pKa = 4.0QEE281 pKa = 3.9RR282 pKa = 11.84LLGQEE287 pKa = 3.83VSEE290 pKa = 4.98VITTGNIPWTSSTT303 pKa = 3.81

Molecular weight: 34.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G1CSA6|G1CSA6_9GEMI Replication-associated protein OS=Paspalum striate mosaic virus OX=1072672 PE=3 SV=1
MM1 pKa = 7.39AASSKK6 pKa = 10.15RR7 pKa = 11.84KK8 pKa = 9.68RR9 pKa = 11.84GSTSATKK16 pKa = 9.95RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 9.37KK20 pKa = 10.11PRR22 pKa = 11.84YY23 pKa = 7.2TKK25 pKa = 8.14WTSARR30 pKa = 11.84SSNRR34 pKa = 11.84DD35 pKa = 3.08ALQVQTFTWGEE46 pKa = 3.91DD47 pKa = 3.25QAFNAGGRR55 pKa = 11.84AILLTAFTRR64 pKa = 11.84GSAEE68 pKa = 3.99NQRR71 pKa = 11.84KK72 pKa = 7.88SQEE75 pKa = 4.03TITYY79 pKa = 9.06KK80 pKa = 10.68VSINLGVSASATVLKK95 pKa = 9.77YY96 pKa = 10.38CCKK99 pKa = 10.26SQPLCWLVYY108 pKa = 10.14DD109 pKa = 4.87KK110 pKa = 11.28SPTGITDD117 pKa = 3.98LTPSDD122 pKa = 3.74IFDD125 pKa = 3.86VPSGLQNWPSTWKK138 pKa = 9.85VKK140 pKa = 10.64RR141 pKa = 11.84EE142 pKa = 3.66ASHH145 pKa = 6.57RR146 pKa = 11.84FVVKK150 pKa = 10.34RR151 pKa = 11.84RR152 pKa = 11.84WPFTLSCNGSTFQKK166 pKa = 10.53DD167 pKa = 3.78YY168 pKa = 11.5TNLPVCNTDD177 pKa = 2.96NLVSVTRR184 pKa = 11.84FAKK187 pKa = 10.25GLGVRR192 pKa = 11.84TEE194 pKa = 4.04WKK196 pKa = 8.74DD197 pKa = 3.15TTTADD202 pKa = 3.56ASDD205 pKa = 3.4IKK207 pKa = 11.11GGALYY212 pKa = 10.66LVVAPANGLVFTARR226 pKa = 11.84GVIKK230 pKa = 10.61VYY232 pKa = 10.27FKK234 pKa = 11.22SVGNQQ239 pKa = 2.8

Molecular weight: 26.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1017

111

364

254.3

28.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.276 ± 1.421

2.065 ± 0.249

4.326 ± 0.501

4.818 ± 1.014

4.818 ± 0.35

4.72 ± 0.68

1.77 ± 0.607

4.621 ± 0.604

7.08 ± 1.028

6.883 ± 0.166

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.672 ± 0.462

3.343 ± 0.744

5.998 ± 0.747

4.425 ± 0.421

5.211 ± 0.677

11.504 ± 0.864

6.785 ± 1.311

6.981 ± 1.009

1.77 ± 0.5

3.933 ± 0.556
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski